AMCG00007827 (ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787)


Basic Information

Item Value
gene id AMCG00007827
gene name ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31414154 ~ 31440378 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007827
TACGTCAAGATACCAGCCCCTTCCTCCGACTCCTCGGGAGCTCTGCGCATCTTCTCCTTCTACCTATCCAGCGAGAGTAAAGACAAACCTCAGGCCGGCTTTGACTGTATACACCAGTATGTCTCTGGGGAAGGTCGACAACAGCTGGAGTGCCAAGGCAGTATTCAGGACAAGATCACCGTGTGCGCCACCGACGACTCCTACCAGATGACCAGGGAGCGCATGTCGCAGGTGGAGAAGGAGACGTGGAGCCGGGCCGCAATAGAAATCAAGCCGGGGTCAACGTATCCAAGTAAATGTGTTAAGATTCAGAAGAAACATGGCCCACCTTCAGCCACGGACAGCTTCCCTTACCACAAGCATTCCCCCACGAACCCCGGCGCGAAGAGGAGCATCACACTCAGCACTGTGGCACAGAGGCCTCTCCGAGATCGCATCATTCACTTACTGGCCTTAAAGCCCTACCGGAAACCAGAGCTTATCCTCTGGTTAGAGAGGGACAAGGCCAGTCCGAAGGATAAAGCTGACCTAGTAACTGTGCTGGATGAGGTTGCAAAACTAAACCCCAAAAACCAGGGCTTCACATTGAAAGATGATTTCTACAGGCATGTTCAGAGGGACTGGCCAAGCTATACTGAGGAGGAGAAGCAGCTTGTTCACAGGCTTCTGGCAAGGAAGCTGCAGCCTCTCAACAATAGCCAAGCGAAGAGTTTCCAGTCAAACCCTTCGTTCCACAAAGCCTCAGGGGATTCTCCTTCGCATCTCAGCCCTGTCAAGAATCTTTCAGTGaaacgTCCAGTGCCTTCTGAGACCCAGGAAAGCCAGCCTAATAAGAAACAGAAAGTATTGAATAACAACTCACACCAGCAGCCCCACTCCAATGGACTCCTTGTCCCTACTGCCATGCACAACCCCTCTGTTCAAGTGAACTCCAGCCTGCACTTCAAGACAGAATTTCAAAGGACACACGGCCACCTCTCGGAAAGCCAGAACGGCTTCCTTCCAAGGCACAAGATCGGTGGCTCCACTGATGCACACAAACCGGAGAGGGAGGGCCAGGCCCACCCACCAGCATCCCTGCACCCTGCCCAGCCTGAGTTTCCCACTTGCACTGACCCCCTCCTCTCCAGCAGCCAGCACAAGAAGAAGAAGTCcaagaaacacaaagagaaagaaCGGGAACGGTTAAAAGAAACCGAGAAGAACGAGTGGCCTGAAAGGAGTCCGGATCTTAAGCAGAGTTTGAAGAATCTGAAAGACCCTGATCGTGCAAATACACCTGTCACTCCTACCTCCCCTGCAGACGTGCCTGACTATTTACTAAAGTACAGCGCTATCGCGACCCCTGAGCAGCGGCAGACCTACAAGGACGACTTCTCTGCGGAGTACAATGAGTACAGAGATCTCCACTCCAGGATCGGCAGCGTCACCGAGCGCTTCATCCAGCTGGGCTCCAAGATCAAGAACCTCTCTCCTGGAACGCAGGAGTACAAGGTAGTGGAGGACCAAATATTCGAGGAGTACAGAAAGTATAAGAAGAAGTTCCCTGGCTACAGGGAAGAGAAGAAGCGCTGTGAGTACCTGCATCAGAAGCTGTCGCACATCAAGCGCCTTATCCTGGACTACGACCAAAACCACACACCTGCATAGTCCTGGTGTGCTCTGCAGCTCTTGTGGACAAAAAGACTACCCAGGGACACGCTCCCAACTGTGACTTTATATcagaaagaacagaaagaaagaccCAGACAGtgcttttcctctttctttcactCTGAAGCTGTGCAGTAGCACCGATTTTAAGTTGCGAGACACGTTGCTCCTGCGCAATGGGCAGAGACCACTGACTTGTGATCAGATTTTGCCCTTTAGCTTAGTTTTCTTGGTGGGAGGAGGCTAGTGTAGTTGAACTCCCAAATGgtgcagaaaatgaaatgtgaaaaggaaAGCAGACAAAACCAAACTCCCTTTTCAACCCCAATTGTGTTAAGTAGTATCTGTGTTATTCCCCGCTCCTCACACCAGGTGTTAATGTTATTTCACAGGCTGgacggttaaaaaaaaatgtattgacaaAAGGGGCTTCAAATTAAGACACTCTCCTAGTCCATGCATTACACTATTATTACACTAATAATCAAGTACCTTATGCAGTTTGCAAGTCTTAATGCAGCAATGTGCAGTCCTGCTGTGTTATTATTGTGACACTATAATGTTTCATTTGGAACCAGGATTGGAGTCAGGTGAGCTTAAGTGCTGTGAATTTTCCACCAAGGAGAAATGAAGCTTGACGTTAGTGAGCTAACCGTTTTAGAGATCCGGAAACCTGCAGACGTTTGCGTCGTGATGTGGCAAGGACAATTCATGATTTTAAACTCAAAGCTTGTTTTTccaaacacaaactgcatttaGTAGAGGATTGGAACCACGTTTTAATAGTTTATTGCATCCAATATCTCAATCTGGGTATGCTTGGTTTGGATTCCTTGCCTATATTTTCTACAGTTAATTCAGTGGCCAGACCTTGGTTATCTTGAGGAATCTGGACAGTTTAGggatgtatatataaatttaagGAAAAAGGCACATTTGTGCTTTTTGGATGGCAGTGAAATTTGCACAGAGCACTCGCATGACATTCCTAGGTCATGGCCTCACTCTGGGGGGGTCATGATCTACTTTAAGTGAAGGGTATCAAATACATACCaagctttatatttttattttacaagtcaAATCAATTTATAGTTTGATGAAACAATTTTAAAGGGAATATATACATCCTCCCCCTCATCATTTTACCTAGTGCTAGTCTCTTCAGGAGTACTGTAAAAGGGCAGCACACTAAGCAGTATCCCTTTATCAATCCTGGTTTCCATAGACAGGAGTGCTCTGTAAGTGTGTGCGCACAGAGATTGTAACCCAGGAGGGATGTGTAGATCTTCATGACATAAGATTAGTGAGGAAGGCTAAATGTGGAAAGACTGACAAATGTCTTGCCTGATTCTCAAggtattttacacatttctttCGCGGCTTTTCCACCAAGTATTCCAGTGGATTTCGGAATCCAACCTGAGACCTGAGAATGCCTTCTTCCTATACATCCGTCCTATTAGTTACTGATGCATGTTCTCCTTTATTATCCTCACATTGTATTTTTGGATTAattccattatatttttaacctaGGAAAAAATGGTTTGCATTGTTCCGTTCACTAAAGTTCCTGGTTTGTTGTTCCTGTATGAGATtaagggagggggtgggggtagcTTGCTTTGCCATTCAGCATATCTAATCCACCTATGGAGATATGCTGCTACTCCATGTCATTATCTCTGTCTTGGATTGATGTGGGGCTCTATGCATCATTTGTATATGTAGGCTTATTAGAGTCACTTCCTCAATCAAAGCGATTTATGGAGCACGTTTCTTACCAGCATATGAATTCCCATTTTCTAATCTGTCTGATGAAGATGCGGTAAGTGGAATGTGCAGATCATATTTTATCAATCCATTTTAAACCCAGTTATCTAGATGTAAAAGGGGCATCTTATCTAGACTCAACTGCAATATCATAAGAAGGAAACCTTATTACATGGGTTTGCCAAAAtaggattgttttattttgtactattcctgttctttgttttatataaattggTAATGCTTGCCTTAAACCAGATCACCTAAACCAGTGCAGAAAGTACTGACTGCCAATGTATCCCATCTCTGAGAATACACCAGGGGGCTGTTTTGGGCTCttcacttcagtgttttttaagGATGCAGTGTCTCTAATTAAGATGTCAATCAGCATACGTATTTGCTTTTCGAAATGGGTACttatttgcaattatttattgCTGATTCgtgaattttgtgttttgttttaaaatggggAATGTTGTACCAGTTGTTTTGCCTTAAGCTGCCGGTCCCTGTAATTCCCAAAGACTGGTTTTGTATCTGCCTTAGATCTCAGTCCATTCTAGAGTGTTCAAAGAAACTGTTATCCCTGTGAAACATGAAATTCCTACAGATTGCTATTGCTATTGGAATAGCCAAAACTCTTCAGCCAGTCTTATCAAGGGCTTTGCACCAAAGTGTCAATGGAGAAGCCATCTTTAAAGCTTTTTGCTGCAATCCCTagtccccttttttttttttttttttttttttttttttt
>TU33260
gTTTGACTTGTTGCATTCGAACCTGGCAAAGACTGGTCTTTCGCAGTTGGAGTACGTCAAGATACCAGCCCCTTCCTCCGACTCCTCGGGAGCTCTGCGCATCTTCTCCTTCTACCTATCCAGCGAGAGTAAAGACAAACCTCAGGCCGGCTTTGACTGTATACACCAGTATGTCTCTGGGGAAGGTCGACAACAGCTGGAGTGCCAAGGCAGTATTCAGGACAAGATCACCGTGTGCGCCACCGACGACTCCTACCAGATGACCAGGGAGCGCATGTCGCAGGTGGAGAAGGAGACGTGGAGCCGGGCCGCAATAGAAATCAAGCCGGGGTCAACGTATCCAAG

Function

symbol description
ell3 Predicted to enable cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated and transcription by RNA polymerase II. Located in several cellular components, including chromosome; cytosol; and nuclear lumen. Part of transcription elongation factor complex.

GO: NA

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007827 True 4192 mRNA 0.45 10 31421210 31440378
TU33260 False 345 lncRNA 0.55 3 31414154 31424691

Neighbor

gene id symbol gene type direction distance location
AMCG00007819 NA coding upstream 74971 31325082 ~ 31339183 (+)
AMCG00007820 NA coding upstream 96758 31305036 ~ 31317396 (+)
AMCG00007818 LOC106573467,LOC106561177 coding upstream 111170 31270675 ~ 31302984 (+)
AMCG00007813 idh2,LOC107714782,LOC107691122,LOC107715227 coding upstream 277907 31111645 ~ 31136247 (+)
AMCG00007816 NA coding upstream 315797 31096738 ~ 31098357 (+)
AMCG00007825 NA coding downstream 55561 31495939 ~ 31497811 (+)
AMCG00007826 NA coding downstream 68293 31508671 ~ 31509949 (+)
AMCG00007833 hcn4,LOC102793391 coding downstream 94951 31535329 ~ 31536009 (+)
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding downstream 116057 31556435 ~ 31559455 (+)
AMCG00007830 hcn4 coding downstream 140348 31580726 ~ 31618878 (+)
G26483 NA non-coding upstream 195832 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 306905 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 307530 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 308133 31103954 ~ 31106021 (+)
G26458 NA non-coding upstream 313638 31100271 ~ 31100516 (+)
G26625 NA non-coding downstream 341260 31781638 ~ 31781891 (+)
G26645 NA non-coding downstream 382362 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 1181882 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1447412 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2548668 33989046 ~ 33990588 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1594602 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1689420 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2407775 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2502588 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 2714092 28682171 ~ 28700062 (+)
AMCG00007854 NA other downstream 2323135 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4170604 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4855840 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5763492 37203870 ~ 37216558 (+)
G27518 NA other downstream 6704606 38144984 ~ 38146850 (+)

Expression


Co-expression Network