AMCG00007828


Basic Information

Item Value
gene id AMCG00007828
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31654997 ~ 31662592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007828
ATCATAAAATCCATGTACAGATTAACTTATGTCTCTATTTAAAATTAGTTGTTCAGCCACATAAATCTCCAAAAATCTCCCAAACACtggtgtgtgtataaatgttacCTCCTCCAAGAgttggatttttgtgttgtcaCTAATTAAccgtgtgtccctgtgtgaTTATGGCAACAAGATGGGGTATTTGTGGTGCGGGGAAAATCAGTAATGACTTCATTGTTGCTTTGAAAACACTTCCTCCTGAAGAACATCAGATTGTGGCTGTGGCAGCCCGTGACTGGATGCATGCCCAGCAGTTTGCTAGGAAACATGGCATCCGAAGAGCCTATGGCAGCTATGAGGCACTGACCAAGGACGAGGATATAGacgtTGTTTATGTGGGAGTTCTTCATACCGAACACCTCAAAGTGGGCCTGATGCTTCTCCAGGCCAAGAAGAATGTGTTGTGTGAGAAGCCTTTTGCAATGAATTCCAGAGAGGTGCAGCAGCTGATAGCAGCCTCTAAGAAGAGCAACGTGTTTCTGATGGAGGCGATATGGACGCGCTTCTTCCCAGTGTCCATTGAGGTTTCCCGACTCCTTGACCAGAAAACCATAGGGGAAGTGAAACTGGTGAAGGCTTACTTTGGGTCTCCCCAACTACACATCCCTCGCTGTGTGGAGAAGGAGACGGGGGGTGGTGCGCTGCTGGACATAGGAGTGTACTGCCTCCAGTTCATCTGCATGGTTTTCAATGGAGAAAAACCACAGGCCATCCATGCCACTGGAGTGTGTCTGGACTCAGTTTTGAAGTTCTCAAGGAACAGGTTGGCCCTTTGCGCCTTCTCCATTTCTGCAACACTACCCAATGATGCCACCATCTGCGGCACAAAGGGGACCATCAGGaTCCCAGCTCCCATGTGGTGCCCCACTTCTTTGCTGGTGAACGATACAGAGTCTCAGTACCCACTGCCTGATCCAGCCATGCCACTGAACTTCACCAACAGCACTGGACTGTGTTACGAGGCAGAGGAAGTTCGCCAATGTCTTCTGAAAGGTCTGAAAGAGTGCCCACGGATGACATTGTCTGACTCCACACTCCTCACAGAAATCATGGATGAAGCCAGGCGCCAGGTTGGAGTAGTCTTCAGCCAGGACACAATCTGAGACCATGTTGTAAAGCCTAATAAACTTTGTTGAAACGTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00078 DHDH; dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007828 True 1189 mRNA 0.48 7 31654997 31662592

Neighbor

gene id symbol gene type direction distance location
AMCG00007830 hcn4 coding upstream 36119 31580726 ~ 31618878 (+)
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding upstream 95542 31556435 ~ 31559455 (+)
AMCG00007833 hcn4,LOC102793391 coding upstream 118988 31535329 ~ 31536009 (+)
AMCG00007826 NA coding upstream 145048 31508671 ~ 31509949 (+)
AMCG00007825 NA coding upstream 157186 31495939 ~ 31497811 (+)
AMCG00007829 LOC102800273,LOC107557431 coding downstream 2054 31664646 ~ 31683335 (+)
AMCG00007834 det1,LOC107654110,LOC107707445,LOC107701843 coding downstream 132381 31794973 ~ 31800664 (+)
AMCG00007838 NA coding downstream 153651 31816243 ~ 31818992 (+)
AMCG00007840 NA coding downstream 542414 32205006 ~ 32219672 (+)
AMCG00007839 LOC108438531,LOC107714007,LOC108269325,LOC107654144 coding downstream 663030 32325622 ~ 32356646 (+)
G26483 NA non-coding upstream 436675 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 547748 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 548373 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 548976 31103954 ~ 31106021 (+)
G26458 NA non-coding upstream 554481 31100271 ~ 31100516 (+)
G26625 NA non-coding downstream 119046 31781638 ~ 31781891 (+)
G26645 NA non-coding downstream 160148 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 959668 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1225198 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2326454 33989046 ~ 33990588 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 214619 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1835445 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1930263 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2648618 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2743431 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 2100921 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 3948390 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4633626 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5541278 37203870 ~ 37216558 (+)
G27518 NA other downstream 6482392 38144984 ~ 38146850 (+)

Expression


Co-expression Network