AMCG00007829 (LOC102800273,LOC107557431)


Basic Information

Item Value
gene id AMCG00007829
gene name LOC102800273,LOC107557431
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31664646 ~ 31683335 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007829
ATGCACCATCTGGTTTGTCACCAGCAGCAAACTTCCAGGAATCTGCTCTCCCGTCTGGCACAATACAGGCATGTGTGGAGAAGAGGCAGATGTTCCTCAGCAGATGCCCTCCCCAGACAGGGTCCCTTGTCCCAGACCCGGATGAACCCCCTAAACATCCAGATGCTGTCCAGGAACCTGCAGGAGCAGATCTTCCGGGGAGCCGTGGTGGACTATAGGGAGGAAGACGTGGAGCGCAGCATGAAGCACCTACAGAGACACGAGCTCTGGGGCTGCGAGACCTCACTTCTCCCAGACGTAGAGCTCTGTCTGCCCCGGATGTATGGTGCCAACATTGACGAGCACTTTCGCATCCTGGCCCAGAAACAGAGCCTGCCCTACCTAGAGGAAGCCAGCCGGCTTAATCGGGCCGAGTTGCCGCCAATGCCTGGGGAGTGGGCCTGGGAGCTGGGCTGGACCCGGTATGGCCCTGGTGGGGAGCGCAGGAGAGTGGATTTCCCAGAGGAGAAGGCTCTAGTATTTGACGTGGAGGTGTGCATGGCGGAAGGCCACTGTCCCACACTGGCTGTAGCTGTCTCTCACACCGCCTGGTACTCTTGGTGCAGTAAGAGGCTGATAGAGGAGCGCTACACCTGGTCCAGTCAGCTGACCCTGGCTGATTTCATCCCCCTGGAGACTCCAGCCAACTCCACTCGACCCCCGGAGGGGCAGTGGATTGAGAGGCTGGTGATTGGGCACAACGTCAGCTTTGACCGGGCGCATATCAAAGAACAGTACCTGCTCAAGGGCTCCAGAATGCGATTCCTGGACACGATGAGCATGCACATGGCGATCTCTGGCCTCACAGGCTACCAGCGATCCCTCTGGATGGCCAGCAAGAAAGGCAAGAGGCGGGGCTTGCAAGAGGTCAAAGAGCACATCAAGAGGGCAAGCAGACGCAAGGAAGGCCCTTCGATTGGCTCATGGGACTGGGTGGACATCAGCAGCATCAATAACTTGGCAGACGTCCACGCGCTGTATGTAGGGGGGCACCCACTGGAGAAGGAGGCGAGAGATATTTTTGTCAAGGGTAGCATGAGTGACGTTCGAGAGAGCTTCCAGGAGCTGATGAGGTACTGTGCTCTGGACGTCCAGGCCACACACGAGGTGTTCAGGGAGCAGCTGCCCCTTTTCATGGAGAGGTGTCCTCACCCTGTATCGTTTGCTGGAATGCTGGAGATGGGTGTGTGCTATCTGCCTGTCAATCAGAACTGGGGGCGTTACCTGGAGGAGGCCCAGGGTACCTTCGAGGAGCTGCAGCGGGAGATGAAGAAGTCGCTGATGAACCTGGCAAATGACGCCTGCCAGCTGCTCGAGGATGAGAGATACAAACAGGACCCCTGGCTTTGGGACTTAGAGTGGGGTGTTCAGGAGTTCAAACAAAAGAAGGCAACAGGCAAGAAGAAGAAGCAAGCACAAGCCGAGAATCCTATTGAACCAGTAAGCCCGGTGAAAGACCTGGAGGAAGATCCAGGCCCTCCCACAGAAGAGGAGGAAGCGGCACCCCCTTCTGCTAGAATTGCACTGGAGCGTCTGAAAGAGACCGTAAACCTGTTGCCCAAGAGGAGACAGCACTTGCCTGGGCACCCAGAGTGGTACCGTAAGCTGTGTTTGAAGATGTCCGATGCAGAGTGGTCTCCTGGGCCGAGCCTGATCAGCCTGCAAATGAGGGTCACTCCCAAACTCATGGGTCTGACCTGGGATGGCTTCCCCCTCCACTACTCAGAGAGGCATGGCTGGGGCTACCTCGTCCCAGGGCGCAAGGACAATCTGGAGCAGCCAGAGGACACCGAGAAAGCCAGCTGCCCATATAGGGCCATTGAGACTGAGTACAGGGAGTATTGTAACCGCAAAGGCAAAGAGCAGCCCCACTGTCTGGACAACACTTTGTCTGATGAATTCATGCTGACTGACAGCAACCTGTGGCAAACAGTGGAGGAGCTGAGCCAGATGGAGATTGTGGAGAATGGGACAGAGGAGGTTTCTGGACCGAGGAGGAGAAAAGGCAGGACCACTGCGTGCATTGTAAATGAACTGAGATACAAAGGTCTTACTGGTCTCAAAAGGCAGCAAGTATCTCTCTTCTccccactaatttattcagcatcagcatttaaatttattttaaagcagttcCCGGAAGTGGAAATTCCTTCTAGTGAGAACCAGCCAACGTATCACCATGGTAATGGACCCTACAATGATGTTAACATCCCTGGATGCTGGTTTTTCAAGCTCCCGCACAAGGATGGAAACGCCAACAATGTGGGCAGCCCATTTGCTAAAGACTTCCTGTCCAAGATGGAGGATGGCACATTGCAAGCAGGTCCAGGTGGGACAAATGCCACACGGGCCTTGGAGATTAATAAGATGATCTCCTTCTGGAGGAACGCACATAAACGCATCAGGTACCTGCTCAGGATGAACGCCACACTACTACAGGAAAGGAAGGTCGTTTGGCTGAGGAAGGGAGAGCTGCCTCGCACTGTCACCAGAAATGCTGCTTTTGACGAGGAGGGGCAGTACGGTGCCATCCTGCCCCAGGTTGTCACAGCTGGTACAGTCACCAGGAGAGCTGTGGAGCCCACGTGGCTCACTGCCAGCAATGCCAGGCGGGACAGGGTGGGAAGTGAACTGAAAGCAATGGTGCAGGTGCCCCCGGGGTACCATCTGGTGGGGGCCGACGTTGACTCGCAAGAGCTGTGGATTGCTGCAATCCTGGGGGAAGCTAACTTCGTTGGCATGCATGGGTGCACTGCGTTCGGCTGGATGACCCTGCAGGGGAAGAAGAGCCAGGGCACTGATCTGCATAGCCGCACCGCTGCCGCTGTGGGCATCAGCCGTGAGCACGCCAAGGTCTTCAACTACGGACGCATCTACGGGGCGGGCCAGCCCTTCGCCGAGCGCCTGCTCATGCAGTTCAACCACCGACTCAGCCTGCCCGAGGCAGCAGCTAAGGCCCGGCAGTTGTACGCCGTCACCAAGGGGATCCGCAGGTACAGGCTGTCCGAGGAGGGCGAGTGGTTGGTGAGGGAGCTGGGCCTCTCCGTTGAGAAGGACGAGAATGGCACCGTCTCTCTCCAGGAGCTGCGCAGGATAACAAAACTGGCCAGCCAGAGctcaaacAGGCACAGGTGGGAGATTGTGGGACAGAGGCTGTGGGCAGGGGGCACAGAGTCAGAGATGTTCAACAAGCTGGAGAGTATTGCTCACTCCCCGCTGCCCTGCACACCTGTCCTGGGCTGCCGCATCAGCAGGGCCCTGGAGCCCAGCACAGTGAAGGATGAGttcATCACTAGTCGGGTGAACTGGGTGGTGCAGAGCTCGGCGGTGGACTACCTGCATCTGATGCTGGTGTCCATGAAGTGGCTGTTCGAGGAGTATGACATCGATGGGCGCTTCTGCATCAGCATCCACGATGAGGTGCGCTACCTGGTGCGCAGCGAGGACCGGCACCGGGCGGCTCTGGCCCTGCAGATTACCAACCTGCTTACACGCGCAGTGGACATTGACCAGTGTCTGCGTAAGGAGGTCAACATGGACTGTGCAACACCCTCAAACCCCACCGGCATGGAGAGGAGATGCGGCATCCCTCAGGGTGAAGCCCTGGATATCTATCGGGTGATTGAGCTCACTAAAGGCTCCCTGGCTAAAGGGAAGTAG

Function

NR:

description
PREDICTED: DNA polymerase subunit gamma-1-like

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005760 gamma DNA polymerase complex cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02332 POLG; DNA polymerase gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007829 True 3702 mRNA 0.57 22 31664646 31683335

Neighbor

gene id symbol gene type direction distance location
AMCG00007828 NA coding upstream 2054 31654997 ~ 31662592 (+)
AMCG00007830 hcn4 coding upstream 45768 31580726 ~ 31618878 (+)
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding upstream 105191 31556435 ~ 31559455 (+)
AMCG00007833 hcn4,LOC102793391 coding upstream 128637 31535329 ~ 31536009 (+)
AMCG00007826 NA coding upstream 154697 31508671 ~ 31509949 (+)
AMCG00007834 det1,LOC107654110,LOC107707445,LOC107701843 coding downstream 111638 31794973 ~ 31800664 (+)
AMCG00007838 NA coding downstream 132908 31816243 ~ 31818992 (+)
AMCG00007840 NA coding downstream 521671 32205006 ~ 32219672 (+)
AMCG00007839 LOC108438531,LOC107714007,LOC108269325,LOC107654144 coding downstream 642287 32325622 ~ 32356646 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding downstream 709270 32392605 ~ 32398918 (+)
G26483 NA non-coding upstream 446324 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 557397 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 558022 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 558625 31103954 ~ 31106021 (+)
G26458 NA non-coding upstream 564130 31100271 ~ 31100516 (+)
G26625 NA non-coding downstream 98303 31781638 ~ 31781891 (+)
G26645 NA non-coding downstream 139405 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 938925 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1204455 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2305711 33989046 ~ 33990588 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 224268 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1845094 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1939912 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2658267 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2753080 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 2080178 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 3927647 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4612883 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5520535 37203870 ~ 37216558 (+)
G27518 NA other downstream 6461649 38144984 ~ 38146850 (+)

Expression


Co-expression Network