AMCG00007830 (hcn4)


Basic Information

Item Value
gene id AMCG00007830
gene name hcn4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31580726 ~ 31618878 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007830
ATGACCTACGACCTGGCGAGCGCAGTGGTGCGCATTGTGAACCTGATTGGGATGATGCTGCTGCTATGTCACTGGGATGGCTGTCTGCAATTTCTTGTGCCCATGCTGCAGGATTTCCCCAGTGATTGCTGGGTCTCCAAGAACAAAATGGTGAATGACACGTGGGGGCAGCAGTACTCCTACGCTCTGTTCAAAGCCATGAGCCACATGCTGTGTATTGGATACGGGCAGCAGGCCCCCGTGGGCATGACGGACGTGTGGTTGACAATGTTGAGCATGATCGTGGGGGCCACCTGCTATGCAATGTTCATCGGCCACGCCACTGCACTGATCCAGTCACTGGACTCCTCACGGCGTCAGTACCAGGAGAAGTACAAGCAAGTGGAGCAGTATATGTCCTTCCATAAACTACCAGCTGACATGCGTCAGCGTATCCATGACTACTACGAACATCGTTACCAGGGCAAGATGTTTGATGAGGAGAGCATTCTGGGAGAGCTTAGCGAGCCTCTGCGAGAGGAAATCATCAACTTCAACTGTCGGAAGCTGGTGGCGTCAATGCCTCTGTTCGCAAATGCAGATCCAAACTTCGTCACGTCCATGCTGACAAAGCTGAGATTCGAGGTGTTCCAGCCGGGAGATTACATCATCCGGGAAGGGACCATCGGCAAGAAGATGTATTTCATCCAGCATGGGGTGGTGAGCGTACTCACAAAGGGCAACAAAGAAACCAAGCTTTCAGATGGCTCATACTTCGGAGAAATCTGCTTGCTGACTCGAGGCAGGAGGACAGCCAGCGTTCGAGCTGATACCTACTGTCGCCTCTATTCCTTGTCTGTGGACAACTTCAATGAGGTCCTGGAGGAATATCCAATGATGAGGAGAGCCTTTGAGACCGTGGCTCTGGACCGGCTTGACCGCATTGGAAAGAAGAATTCCATTTTGCTGCACAAGGTCCAACATGACCTCAACTCGGGCGTTTTCAACTACCAGGAGAATGAGATTATCCAGCAGATTGTGCAGCACGACAGGGATATGGCCCACTGTGCGCACTTGTTGCAGAACGCTCCACCTCCCGTGTCTAGCCCTACGCCGGTCATCTGGACCCCACTCATCCAGGCACCCTTACAGGCAGCTGCGGCGACCACCTCCGTTGCAATCGCCCTGACACATCACCCTCGACTTCCGGCTGCCCTCTTTCGTCCTCAAGTCTCCGTGCTTAGCTCTCTGAGGGAGCAATCGAGCCACCTGAAGAGGTTTCACCCTCTGGTGCCCACTACAACTGCCTCCGCCGGCGGCTCGCCCTCCAGCACTCCCTCCCAGCTACACTCGTCAGGGGCAGACATTCCCTCACTAGCGTCCTTCCAGGCCCACCAACCAGGCTCAGCCAGCTCCAGCCACCACCCTTCCTCCAGCTTTGCCCCCCAGCCCGGGCCCAGCAGTGCTTCCATGTTCCCATTCAGCCAGTTCCAGCTATCGGGGTCGCCTTCCTCCAGCACTGCTCAACTTTATCAACcccagcagcaacagcagcccTTGTCTTGTAGCACGCCCACATCAGGCCTCTTCCAACAAGGAGCATCAGGTGGTGCTGCTGCCAATTTCAGCCCTTTGGCCTCCAACTCACCAAGCCCCCTACTTGGGCAGTTGCAGCAGCCACCCCCCAGGGTTCCTCAGGTGGGATCCTTACAGCAATTTGCAGGTGGAGGCAGGACTTCCAGTGGTCTGAACCTCTTCCAGACCCCTCCATCCAGCTCCCCATCGTCCAGTTTGAACCAGCTGTCCCAGCCAGCCTTGGGTTCCCCTTCGTCTTTGACCCAACACGGCTTGGGAGGCCTGCAGTCGGGTTTCATTGCTCAACTCCACCAAGAGCGCTCCGGCCTTCCCTCCCTGTCCCGGAATGGCTCTGGCACTGCCTCTCCTTCCTTCACCCCCCTGGTGCCAAGCCCCACTGTCCAGAGCCCTGTGACTGGGAGAACTTTCCAGTACAGTGACCCATCGAGTGCAACCGGTTCCCATAGCTCCCTCCTCACCCCACAGACCTCATGCCCGGCCCAGTCCCTGAGCCAGTCCCGAGCAGGCACAGCGTCCCCCATAGGCCGCTTCTCGCAAGAAATCAAACTGATCTCCACCTCGCATCCCTCCCTGCCACAGGAGGTAGCTCAGGCCTTGAGCCGGGCTTCTCCACACTCCTCCAGGGAGTCAGTCTCTTGCTTTTCCCCCTTCTCTTCTCCCACTCTCCTGGGAAAACCCTGTAGCTCCATCCCTGGCCGGATGACTCTCCCCAGGCAAATGTCCTCAGGGTCCATACCTCAGACACACACCCCCGGGGCCTCCCCCGCCTTCCTTCCGAGGAAGGGCTCTACTGCTTATACACCTGAACTAGAACCTGTCAGGTCCAAATTACCATCAAATTTGTGA

Function

symbol description
hcn4 Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Acts upstream of or within heart contraction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in heart primordium and pericardial region. Used to study sick sinus syndrome. Human ortholog(s) of this gene implicated in Brugada syndrome 8; Gilles de la Tourette syndrome; and sick sinus syndrome. Orthologous to human HCN4 (hyperpolarization activated cyclic nucleotide gated potassium channel 4).

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007830 True 2421 mRNA 0.57 6 31580726 31618878

Neighbor

gene id symbol gene type direction distance location
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding upstream 21271 31556435 ~ 31559455 (+)
AMCG00007833 hcn4,LOC102793391 coding upstream 44717 31535329 ~ 31536009 (+)
AMCG00007826 NA coding upstream 70777 31508671 ~ 31509949 (+)
AMCG00007825 NA coding upstream 82915 31495939 ~ 31497811 (+)
AMCG00007819 NA coding upstream 241543 31325082 ~ 31339183 (+)
AMCG00007828 NA coding downstream 36119 31654997 ~ 31662592 (+)
AMCG00007829 LOC102800273,LOC107557431 coding downstream 45768 31664646 ~ 31683335 (+)
AMCG00007834 det1,LOC107654110,LOC107707445,LOC107701843 coding downstream 176095 31794973 ~ 31800664 (+)
AMCG00007838 NA coding downstream 197365 31816243 ~ 31818992 (+)
AMCG00007840 NA coding downstream 586128 32205006 ~ 32219672 (+)
G26483 NA non-coding upstream 362404 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 473477 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 474102 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 474705 31103954 ~ 31106021 (+)
G26458 NA non-coding upstream 480210 31100271 ~ 31100516 (+)
G26625 NA non-coding downstream 162760 31781638 ~ 31781891 (+)
G26645 NA non-coding downstream 203862 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 1003382 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1268912 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2370168 33989046 ~ 33990588 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 140348 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1761174 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1855992 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2574347 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2669160 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 2144635 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 3992104 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4677340 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5584992 37203870 ~ 37216558 (+)
G27518 NA other downstream 6526106 38144984 ~ 38146850 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_04447199_04476531 HCN4L, HCN4 coding CI01000055 null 4446846 ~ 4476531 (-)