AMCG00007833 (hcn4,LOC102793391)


Basic Information

Item Value
gene id AMCG00007833
gene name hcn4,LOC102793391
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31535329 ~ 31536009 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007833
ATGGACAAGTTGCATTCTTCCATGCGCAAAAGGCTGTACAGCCTACCCCAGCACATTGGACAGAAAGCCTCGATCATGGGCGAGGGAGAAGACAGCGACAAGGACACCCGGAGAAAGAGCATCAAGATGAAGCCCCTGCCTTCGCCGTCCTCCGGGGGCAGCTGCAAAGGTATGGGGGACACCAAAGGCGGGGATTCGGTGATTATGGAGACCGACATCGGGAGACCCATCAAGACCAGCTCGAATGGGGACTGTAGGAGATTCAGAGGCAGCCTCTCGTCCATCACTAGCCGGCACGTCCACGACTCAGCCTCGGCGGAGGAGAGACGGCTCATCACAGAGGGAGATGTCAGCCCTTGCGAGGAGAGCAGCCCGCCCGGGGCTCTGGGCTGTGGGGCAGACCAGGGAGCGCAAGGCAGCGGCTTCAAGGATCAACAGGCATCCCCTGACCAGGAGTCGGGCTTCATAAAGTTGGATGGCATTGACCAAATTCTGCCGGACGACGAGCAGAGATTGTACCAGGCTGGCTTCATTCACAGGCAGTTTGGAGCCATGCTGCAGCCAGGGGTCAATAAGTTCTCCTTAAGAATGTTTGGGAGTCAAAAGGCAGTGGAGAGGGAGCAAGAGCGGGTTAAATCCGCCGGATTTTGGATAATTCATCCATACAGTGATTTCAGGTAA

Function

symbol description
hcn4 Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Acts upstream of or within heart contraction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in heart primordium and pericardial region. Used to study sick sinus syndrome. Human ortholog(s) of this gene implicated in Brugada syndrome 8; Gilles de la Tourette syndrome; and sick sinus syndrome. Orthologous to human HCN4 (hyperpolarization activated cyclic nucleotide gated potassium channel 4).

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007833 True 681 mRNA 0.57 1 31535329 31536009

Neighbor

gene id symbol gene type direction distance location
AMCG00007826 NA coding upstream 25380 31508671 ~ 31509949 (+)
AMCG00007825 NA coding upstream 37518 31495939 ~ 31497811 (+)
AMCG00007819 NA coding upstream 196146 31325082 ~ 31339183 (+)
AMCG00007820 NA coding upstream 217933 31305036 ~ 31317396 (+)
AMCG00007818 LOC106573467,LOC106561177 coding upstream 232345 31270675 ~ 31302984 (+)
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding downstream 20426 31556435 ~ 31559455 (+)
AMCG00007830 hcn4 coding downstream 44717 31580726 ~ 31618878 (+)
AMCG00007828 NA coding downstream 118988 31654997 ~ 31662592 (+)
AMCG00007829 LOC102800273,LOC107557431 coding downstream 128637 31664646 ~ 31683335 (+)
AMCG00007834 det1,LOC107654110,LOC107707445,LOC107701843 coding downstream 258964 31794973 ~ 31800664 (+)
G26483 NA non-coding upstream 317007 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 428080 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 428705 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 429308 31103954 ~ 31106021 (+)
G26458 NA non-coding upstream 434813 31100271 ~ 31100516 (+)
G26625 NA non-coding downstream 245629 31781638 ~ 31781891 (+)
G26645 NA non-coding downstream 286731 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 1086251 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1351781 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2453037 33989046 ~ 33990588 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 94951 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1715777 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1810595 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2528950 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2623763 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 2227504 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4074973 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4760209 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5667861 37203870 ~ 37216558 (+)
G27518 NA other downstream 6608975 38144984 ~ 38146850 (+)

Expression


Co-expression Network