AMCG00007834 (det1,LOC107654110,LOC107707445,LOC107701843)


Basic Information

Item Value
gene id AMCG00007834
gene name det1,LOC107654110,LOC107707445,LOC107701843
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31794973 ~ 31800664 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007834
GCTCTGTAACTCGATGGTGTCTCACATAGTTTCCGAGTCAGGGCAGGAGCtttttgaattgtgtttcttttaaattgttGACTGTTGTGGAAGCAAAACGTGGATGTATAGCTTGAGTCCGAAAGGGTAATATTGATATTGTCTGGATATATTTGAAATCGTTTGGGCAGCACTATCTCAACCATTCGGGTTGAGCCATAGGTGAGGTACTTGTAATTCAGTGTTAACCAGCACCTAAATAGTTCTCTTTAAgtagaATTACTGAAGCAATGTAACCCATGACAGCACTACATGTCTTTAAAATGGAGGATGAGTCCCCAACTCTTAAACCACGTCGCATCCAAAACCAGAACGTGGTCCATCGACTGGAGCGCCGGAGGGTCTGTTCAGGCCGTGCTGGAGCACACTGGTACCGGGTACGCTGTTTCCACCAGAACCTGTTCCCCAACTTTACAGTGGTGAATGTAGAGAAGCCACCATGCTTCCTGCGCAAGTTCTCCCCAGATGGACGCTGCTTCATCGCCTTCTCCTCTGACCAGACATCACTGGAGATCTATGAGTACCAGGGCTGCCAGGCAGCAGAAGACCTGCTGTGGGGCCAGGAGGGTGAAACCCTAGCAAATGGTAATGACCAGCGCTCCCTCAACATCCGTGGCCGCCTCTTCGAGCGCTTCTTCTCCCTGCTTCACGTCACAAATGTGGCCTCCAATGGGGAGCATCTGAACCGGGAGTGCAGCCTCTTCACAGATGACTGCCGCTATGTCATTGTTGGCTCCGCTGCCTACCTTCCCGAGGAGCCTCACCCTCACTTCTTTGAGGTTTACCGCAACAATGAGTCGGTCACCCCGAACCCCCGCTCCCCTCTGGAGGATTATTCCCTCCACATAATCGACCTGCACACTGGCCGCCTCTGTGACACACGGGCCTTCAAATGCGACAAGATTATCCTTTCACACAACCAGGGACTCTACCTCTATCGCAACATCTTGGCTGTTCTCTCTGTGCAGCAgcagaccatccatgtttttcaGGTGACCCCAGAAGGCACCTTCCTGGATGTGAGGACCATCGGCCGCTTCTGCTATGAAGATGACCTGCTGACACTTTCTGCTGTGTACCCTGAGGCCCAGGCAGAGGGTCAGCCAGGCTTCTCGCGTCTCTACAAGGAGAAGACCATCAACTCTCTGAAGCACCGGCTGTTGGTATACCTATGGCGCCGGGCGGAGCAGGACGGCAGCGCCACAGCTAAGCGCCGCTTCTTCCAGTTCTTTGACCAGTTGCGTCAGCTGCGCATGTGGAAGATGCAGTTGTTGGATGAGCACCACTTGTTCATCAAGTACACCAGTGAGGACGTGGTCACCCTGCGTGTCACTGACCCCTCCcagCCCTCGTTCTTTGTGGTTTACAACATGGTGACCACAGAGGTGCTTGCAGTGTTTGAGAACACGTCCGACAAACTGCTGGAGCTCTTTGAGAATTTCTGTGACCTGTTCCGCAACGCCACCTTGCATAGCGATGCCGTTCAATTCCCCTGCTCTGCTTCCAGCAACAACTTTGCACGTCAGGTCCAGCGCAGGTTCAAGGATACAATTGTGAATGCAAAATACGGGGGTCACACTGAGGCAGTCAGGCGGCTCCTGGGACAACTGCCGATTAGTGCCCAGTCCTACAGCAGCAGCCCCTATTTGGACCTCTCTCTTTTCAGCTATGATGACAAGTGGGTGTCTGTGATGGAGCGGCCCAAAACCTGTGGGGACCACCCCATAAGATTTTATGCACGGGATTCAGGGCTACTGAAGTTCAAGATCCAGGCTGGACTTTTAGGCCGTCCTATTAATCATGCAGTGCGGAGACTGGTGGCTTTCACTTTCCACCCATTTGAGCCCTTTGCAATCTCAGTGCAGCGAACCAATGCAGAGTATGTGGTCAATTTTCACATGCGCCATGTCTGTGTTTGAAGGACTCTCATGAGAAAAGTAATAGAAGAGCCAGCAAACAAAGTATAGGCCTATTATCTTTGGATTTGTTGGGAGCTGTGGAACACTATTGATTCAGGATATTTGCTGTTCTACTGctttgaacatattctggtaTGTGTCAAGTCCAAAAGCAGACcttgatgttgttgttggtgaACACCAAAATCGGAGCTCCTTCCagaataaaaaagcatttttttccattgtaattaaacaaaataagtacTCCAACTGAGGTTCTTCAGAATGTGGTATTGACCTAACTAAATTAATGCTTTTTGAAAGGTAGCTTAGTAgcatctgtttttatatattgagaGCCTTTGGGGGGGGTAACAAAACAGgtactatttttttaaatttatttaatatattttcaaattggctcaataaatatttattctccttttttatgttgtgtgtatatctatatatgtatatacatgtgtgtgtatatgtataaatacatttctatgcTTTTTACTACAATTTTATTCATCTTTTGTAATTGCTAAACATTAAAGGTAGATTCTGTGCAAAATTCCACAGATGTGGAGATACTGTCACTGAGAGCCAGCAGGTAGATATTACAGCCCCAGGGATGTTGAGGTTGGTGTTTAATACAGTtctattgaaaatgtgtgactTGAATGATGTGCAGCAGAATGCAAATTATGATacatttaagatgcattttttgcatttaaggCTCCATTCCATTATTTATCATTAAATGGTTTCTCTTGTTTACACACTGAAAACTTGATCCTGAC

Function

symbol description
det1 Predicted to enable ubiquitin ligase-substrate adaptor activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human DET1 (DET1 partner of COP1 E3 ubiquitin ligase).

NR:

description
PREDICTED: DET1 homolog

GO: NA

KEGG:

id description
K10571 DET1; de-etiolated-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007834 True 2752 mRNA 0.47 7 31794973 31800664

Neighbor

gene id symbol gene type direction distance location
AMCG00007829 LOC102800273,LOC107557431 coding upstream 111638 31664646 ~ 31683335 (+)
AMCG00007828 NA coding upstream 132381 31654997 ~ 31662592 (+)
AMCG00007830 hcn4 coding upstream 176095 31580726 ~ 31618878 (+)
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding upstream 235518 31556435 ~ 31559455 (+)
AMCG00007833 hcn4,LOC102793391 coding upstream 258964 31535329 ~ 31536009 (+)
AMCG00007838 NA coding downstream 15579 31816243 ~ 31818992 (+)
AMCG00007840 NA coding downstream 404342 32205006 ~ 32219672 (+)
AMCG00007839 LOC108438531,LOC107714007,LOC108269325,LOC107654144 coding downstream 524958 32325622 ~ 32356646 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding downstream 591941 32392605 ~ 32398918 (+)
AMCG00007841 NA coding downstream 728138 32528802 ~ 32850205 (+)
G26625 NA non-coding upstream 13082 31781638 ~ 31781891 (+)
G26483 NA non-coding upstream 576651 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 687724 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 688349 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 688952 31103954 ~ 31106021 (+)
G26645 NA non-coding downstream 22076 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 821596 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1087126 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2188382 33989046 ~ 33990588 (+)
G26825 NA non-coding downstream 2191514 33992178 ~ 33993982 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 354595 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1975421 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 2070239 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2788594 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2883407 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 1962849 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 3810318 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4495554 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5403206 37203870 ~ 37216558 (+)
G27518 NA other downstream 6344320 38144984 ~ 38146850 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000145_00639759_00646186 DET1, DET1.L coding CI01000145 null 639578 ~ 646186 (-)