AMCG00007835 (LOC107594750)


Basic Information

Item Value
gene id AMCG00007835
gene name LOC107594750
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31804899 ~ 31816151 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007835
agatatgtattaataattatataaattgtatatgattaatgtgttaaatatattgtaaattatattgttatttttctaaaacaaaacaaaacaaaatttggaaaacaaacgTGCGTTAGTAGTTTTGTACAATTGTAACTACCCCCGGAAAATGTGTAACATTGCGATATTCCATATCGTAACcttgaatacaatacaatacacatggCTTCTTGTGCCCAGAGCCCATGACACCAAGTGAAAATGCAATTTAGGTTGTTGATGAAGACGGTATATTAAATAGGGAATCTGGTGTTATAAGTAAATAATGTATAGTTTTAGTAACAAATTGGGTGGTTTGGCACGGACTGCTTACCAACATTTTGCAGCTTCCGCAAGCACAAGAAACTGGACGTTTGTGAGCAGGACAGTGAGTTCTAGTGCAGTCAGGAACCAGGATGTGGTAAAGACCCCCAATGAGTCCTTGAAGAGCTCTGAGGAATTCAGCATTTATCCTCCACTTCCTCACCATGAAAGCTCTTTGAGATGGGGGGGTAAGACATTTGAGGAGTTGCCCATTGCCCACATCAAAGCCACATACAACAACACTCACATACAGGTTACAGACCATCAAGGACAGTATATGGTGAGGACGTCCTGCGGCACAGAAGGGTTCAGAAATATCAAGAAGTCAACCCCCATTGCGGCCCAGACTGCCGGCATCTCCGCTGCTGCGAAGGCACAGGCAAAGGGTGTGGCGTTCGTGCGGGTGATGGTAAAGGGTCTGGGCCCGGGACGCTTGtcagCCATCAAGGGGTTAACGATGGGCGGCCTAGAGGTTGTGTCCATCACAGACAACACCCCCATCCCCCACAATGGATGCCGTCCACGCAAGGTGCGCAGGATGTGAGGCCAAGGGAACCCACCCTCTCAGCACATGGACTGCAATCTGCCTGACACCCACcacaaataaactttttttttttacaaacatcCTTGTTCACCGATTTCAGTTTAACATTGCTGATACTTACTACTCAAATATATCAAAGCATCTTTCCAATAAATCACACCAGTCAAACATTTGAGtggtggtggggagggaggggggtaaatgttttcattttctaaatgttagtCATTACAAATGTTGATACAGTTTTGGTGTTTACGTACATAAGCTGACAATGGTTACTgaatcattaaatgttttaactttcttttaaagcaaaatattcaGACAAAGATGAAGTCAACAGCTTTTCTATTTCATCAACACAATCAGTACAAGAGCCTGTAGCTTAAAAATGAGTTTGTGATGTGTGGTATTTTAAAGGCAGTGGGAAGAGCTCActggagaaaataaagcatGGAAATAGTTGAGaaatcatttgtgtttgttaccATATAGGTAGGTATGTAACGAATTGGTAATTAACCCTTGGGAGTGAAAACCAACTGGAATGTGAGTTATACTGATGCCCCAGGAATCATCGAACTGTTTTTTTACTAGGAACTGACTAAGACTAAAATATATGTGCTTTAACCTGGATTATCTCAGATGCATCGACATCAGTGTTTTCTGGAGAGGAGAGGATTCACtctcaaaaatataaattagagTTATACATAAGATACATGCATAAGGTTACTGTGGTTCTTTTAGCattgatttatgattttttgAGAGTGACACATTTTATGTCATTCACTTTCAGTTCATGCACATATTGCCTGTATTTGGTACAGACCCTTTCACACAAGTATTAGTAATCACCAGTTCGTGTAGTCTTATCTCTCAGATGAATCCAAACAGATTTTGTTGGTAAGGTGAGCACTGAACACATGCAATAGAAATggtaacaaaatatacatttttattatatttctggatcaatgtttttattacatgttttcaaatatactTATTGGGAAAATAGGCACTGTTCAAGTAGGGTTAAGTGTCACCTCAGAGTCTCAGCACTATGGAAAGCCCATTTGAACAAAACTGGTAAGGACTTGTCTGTGTAGCACAGCTATTGTAATTCAGACTAATGAAAACATAAAGTTGATACATTTTACTTCAGATTTCTATACATGCCTAACAGCCTTTAAAGCTATAATtatcaatcaatatgtttacATGGCACAAGTATTAGGAATTGTAAGGAATATGCATTCTGAATGTtctgtttaaatgcatcagGATTCTCAATATGCTTTTTATATGACAGAATATTCAGTTTATGCTACTGAGTACCACTGCAAACCTCAGAACAGTGAACGTGTGTTTGAAGATAACCTGTAATCTGGTGTTCTTGTAGCCTAATATTTAACAATAGACTTTATTGTACTTCTTCAGAtatgaattttaatatttttagattGTGTTGGTATGTGGGGGCATAATTCAGTGTGCTGTGGTGTTGCAAACTAGAACATTTATGTCTTTAACTGCCAGTGACAACATATTAAGGATTGtacaaacatgtttaatgtcCACATATTCAGAATATGCCATGGCGCGGAAATCCTTTAATATTCCAAATAAAAGGAATATCAATCCCtgaatacaagaaaaacaagtggAATATAAGTGCCCATGTAAACGCAGTGATTGTTAATTAAAGTTGAGGTGATGACACGTttgtaaattacttttcatttcagtgtaATTCTACACTGCAATCAGGTGATGCAGAGCAATGTACCTCTTAGTGTAATTAACAGTCAGAAAGTTAAGTACAAATCTTGTAAAAcaagtttcttttgttttatgttttaaaaatgtcatctTTTCAGTGGAAAAATTCCACAATGGCACACTGACTAGACCATTTACTCTAGCAAGTGCATTAATGTGTCCCGAATCACCTGTTTgtagttaaaatattttaatggaaagagtctattattttaaatacaggaataaacagatctgttattttaaagaaattgatGCAGATTGACA
>TU33393
ACTGTTCAAGTAGGGTTAAGTGTCACCTCAGAGTCTCAGCACTATGGAAAGCCCATTTGAACAAAACTGGTAAGGACTTGTCTGTGTAGCACAGCTATTGTAATTCAGACTAATGAAAACATAAAGTTGATACATTTTACTTCAGATTTCTATACATGCCTAACAGCCTTTAAAGCTATAATtatcaatcaatatgtttacATGGCACAAGTATTAGGAATTGTAAGGAATATGCATTCTGAATGTtctgtttaaatgcatcagGATTCTCAATATGCTTTTTATATGACAGAATATTCAGTTTATGCTACTGAGTACCACTGCAAACCTCAGAACAGTGAACGTGTGTTTGAAGATAACCTGTAATCTGGTGTTCTTGTAGCCTAATATTTAACAATAGACTTTATTGTACTTCTTCAGAtatgaattttaatatttttagattGTGTTGGTATGTGGGGGCATAATTCAGTGTGCTGTGGTGTTGCAAACTAGAACATTTATGTCTTTAACTGCCAGTGACAACATATTAAGGATTGtacaaacatgtttaatgtcCACATATTCAGAATATGCCATGGCGCGGAAATCCTTTAATATTCCAAATAAAAGGAATATCAATCCCtgaatacaagaaaaacaagtggAATATAAGTGCCCATGTAAACGCAGTGATTGTTAATTAAAGTTGAGGTGATGACACGTttgtaaattacttttcatttcagtgtaATTCTACACTGCAATCAGGTGATGCAGAGCAATGTACCTCTTAGTGTAATTAACAGTCAGAAAGTTAAGTACAAATCTTGTAAAAcaagtttcttttgttttatgttttaaaaatgtcatctTTTCAGTGGAAAAATTCCACAATGGCACACTGACTAGACCATTTACTCTAGCAAGTGCATTAATGTGTCCCGAATCACCTGTTTgtagttaaaatattttaatggaaagagtcta

Function

NR:

description
PREDICTED: 28S ribosomal protein S11, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02948 RP-S11, MRPS11, rpsK; small subunit ribosomal protein S11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007835 True 2950 mRNA 0.37 6 31804899 31816151
TU33393 False 969 lncRNA 0.34 1 31804959 31805927

Neighbor

gene id symbol gene type direction distance location
AMCG00007836 det1 coding downstream 7855 31795695 ~ 31797044 (-)
AMCG00007831 NA coding downstream 77460 31701336 ~ 31727439 (-)
AMCG00007824 NA coding downstream 358836 31430316 ~ 31446063 (-)
AMCG00007823 NA coding downstream 446508 31355360 ~ 31358391 (-)
AMCG00007821 NA coding downstream 481818 31322734 ~ 31323081 (-)
AMCG00007843 NA coding upstream 562284 32378435 ~ 32378904 (-)
AMCG00007842 NA coding upstream 712537 32528688 ~ 32804157 (-)
AMCG00007844 LOC106560959 coding upstream 1327405 33143556 ~ 33214893 (-)
AMCG00007849 NA coding upstream 1610848 33426999 ~ 33454436 (-)
AMCG00007848 NA coding upstream 1686169 33502320 ~ 33507381 (-)
G26626 NA non-coding downstream 23008 31781638 ~ 31781891 (-)
G26598 NA non-coding downstream 118467 31685771 ~ 31686432 (-)
G26416 NA non-coding downstream 901004 30903669 ~ 30903895 (-)
G26403 NA non-coding downstream 929521 30800411 ~ 30875378 (-)
G26370 NA non-coding downstream 1193206 30610218 ~ 30611693 (-)
G26646 NA non-coding upstream 6591 31822742 ~ 31822969 (-)
G26684 NA non-coding upstream 597129 32413280 ~ 32417500 (-)
G26764 NA non-coding upstream 1776071 33592222 ~ 33640336 (-)
G26800 NA non-coding upstream 1909431 33725582 ~ 33725896 (-)
G26847 NA non-coding upstream 2170396 33986547 ~ 33987991 (-)
AMCG00007822 NA other downstream 462107 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 558250 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 2790952 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 2883776 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 4434380 27357731 ~ 27370519 (-)
G26961 LOC101154678 other upstream 3053284 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 4187042 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 5026324 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 5423933 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 5678760 37494911 ~ 37499392 (-)

Expression


Co-expression Network