Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00007836 |
| gene name | det1 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 31795695 ~ 31797044 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| det1 | Predicted to enable ubiquitin ligase-substrate adaptor activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human DET1 (DET1 partner of COP1 E3 ubiquitin ligase). |
| description |
|---|
| PREDICTED: DET1 homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00007836 | True | 909 | mRNA | 0.57 | 5 | 31795695 | 31797044 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00007831 | NA | coding | downstream | 68256 | 31701336 ~ 31727439 (-) |
| AMCG00007824 | NA | coding | downstream | 349632 | 31430316 ~ 31446063 (-) |
| AMCG00007823 | NA | coding | downstream | 437304 | 31355360 ~ 31358391 (-) |
| AMCG00007821 | NA | coding | downstream | 472614 | 31322734 ~ 31323081 (-) |
| AMCG00007814 | NA | coding | downstream | 651291 | 31136466 ~ 31144404 (-) |
| AMCG00007843 | NA | coding | upstream | 581391 | 32378435 ~ 32378904 (-) |
| AMCG00007842 | NA | coding | upstream | 731644 | 32528688 ~ 32804157 (-) |
| AMCG00007844 | LOC106560959 | coding | upstream | 1346512 | 33143556 ~ 33214893 (-) |
| AMCG00007849 | NA | coding | upstream | 1629955 | 33426999 ~ 33454436 (-) |
| AMCG00007848 | NA | coding | upstream | 1705276 | 33502320 ~ 33507381 (-) |
| G26626 | NA | non-coding | downstream | 13804 | 31781638 ~ 31781891 (-) |
| G26598 | NA | non-coding | downstream | 109263 | 31685771 ~ 31686432 (-) |
| G26416 | NA | non-coding | downstream | 891800 | 30903669 ~ 30903895 (-) |
| G26403 | NA | non-coding | downstream | 920317 | 30800411 ~ 30875378 (-) |
| G26370 | NA | non-coding | downstream | 1184002 | 30610218 ~ 30611693 (-) |
| G26646 | NA | non-coding | upstream | 25698 | 31822742 ~ 31822969 (-) |
| G26684 | NA | non-coding | upstream | 616236 | 32413280 ~ 32417500 (-) |
| G26764 | NA | non-coding | upstream | 1795178 | 33592222 ~ 33640336 (-) |
| G26800 | NA | non-coding | upstream | 1928538 | 33725582 ~ 33725896 (-) |
| G26847 | NA | non-coding | upstream | 2189503 | 33986547 ~ 33987991 (-) |
| AMCG00007822 | NA | other | downstream | 452903 | 31338716 ~ 31342792 (-) |
| AMCG00007817 | NA | other | downstream | 549046 | 31192010 ~ 31246649 (-) |
| AMCG00007768 | NA | other | downstream | 2781748 | 29001049 ~ 29013947 (-) |
| AMCG00007757 | tbc1d2b,LOC107757764,LOC107659498 | other | downstream | 2874572 | 28894693 ~ 28921123 (-) |
| AMCG00007704 | NA | other | downstream | 4425176 | 27357731 ~ 27370519 (-) |
| AMCG00007835 | LOC107594750 | other | upstream | 7855 | 31804899 ~ 31816151 (-) |
| G26961 | LOC101154678 | other | upstream | 3072391 | 34869435 ~ 34869807 (-) |
| AMCG00007883 | chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 | other | upstream | 4206149 | 36003193 ~ 36010995 (-) |
| AMCG00007907 | NA | other | upstream | 5045431 | 36842475 ~ 36846583 (-) |
| AMCG00007929 | NA | other | upstream | 5443040 | 37240084 ~ 37242983 (-) |
