AMCG00007838


Basic Information

Item Value
gene id AMCG00007838
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31816243 ~ 31818992 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007838
ATGGCGGCCCCCATGAGCAGGTTGCTGTTTCGTCCTCTGCAGAGGATTGTACTGTGGAATAGCGGCTGTCGACCgctttctctcctctccccgGCGTGCAGTACACATAACAAGACAAATGAAGCCGTGAAAAGCATTGATTCTCCATGGCGTTTGTTTggtgctgtctgtctgcaaaGACCGGCTGTCATTTCGCAAGACAGGAGCCCTTTAGAAGAACAGTTCGCCAATTTAATGCATCAGATGGAGTTGGAGAAAAGCCTGCTCTCGGACCATGAGTTGCGGCTGCTGGAAGATGCAGAGCGCATGAGCCGGAAACAGGCAGAAGATTATGACTCTGAGGATGAGGACACAACCGAACAGGAGATTGTCACAGCACAGGATCTGGAGGATATCTGGGAACAGAAACTGAAGCAGTTCAAACCTGCAGCCAGGGTCACAGAGGCTGACCAGAAGGAAGACAGGACCTCTCTGAACCGCTGCTTGGCACAAAGTGTAGTGCTGTTGGTGAAGGAGCAAGTTGGCAGTGAGGAGGTATGGATGCTGCCTCAGCTACCATGGGAGGCGGGGGAGACCCTCCAACAGACAGCAGAGAGAGCCCTCATCAGCTTGCCAGGTAACAACTCTAAGGTCACTTTCCTAGGCAATGCACCCTGTGGATTTTATAAGTTCAAATTCCCCAAGAACATCAGGACACAGAGCTGTGTTGGGGCcaaggtgttttttttcaaagctttgCTTTTGAGTGGCAGTCTCTCCAATATTCAAGAAAAGAAGCACATGTGGGTGAATAAAAGTGAGCTGAGAGACTACCTAAAGCCAGAGTACCTTAAACAGGTGGAACGCTTTCTCATGGATCTGTAA

Function

GO: NA

KEGG:

id description
K17427 MRPL46; large subunit ribosomal protein L46

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007838 True 864 mRNA 0.50 4 31816243 31818992

Neighbor

gene id symbol gene type direction distance location
AMCG00007834 det1,LOC107654110,LOC107707445,LOC107701843 coding upstream 15579 31794973 ~ 31800664 (+)
AMCG00007829 LOC102800273,LOC107557431 coding upstream 132908 31664646 ~ 31683335 (+)
AMCG00007828 NA coding upstream 153651 31654997 ~ 31662592 (+)
AMCG00007830 hcn4 coding upstream 197365 31580726 ~ 31618878 (+)
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding upstream 256788 31556435 ~ 31559455 (+)
AMCG00007840 NA coding downstream 386014 32205006 ~ 32219672 (+)
AMCG00007839 LOC108438531,LOC107714007,LOC108269325,LOC107654144 coding downstream 506630 32325622 ~ 32356646 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding downstream 573613 32392605 ~ 32398918 (+)
AMCG00007841 NA coding downstream 709810 32528802 ~ 32850205 (+)
AMCG00007845 klhl25,LOC106560960,LOC107714043 coding downstream 1531102 33350094 ~ 33357685 (+)
G26625 NA non-coding upstream 34352 31781638 ~ 31781891 (+)
G26483 NA non-coding upstream 597921 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 708994 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 709619 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 710222 31103954 ~ 31106021 (+)
G26645 NA non-coding downstream 3748 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 803268 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1068798 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2170054 33989046 ~ 33990588 (+)
G26825 NA non-coding downstream 2173186 33992178 ~ 33993982 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 375865 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1996691 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 2091509 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2809864 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2904677 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 1944521 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 3791990 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4477226 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5384878 37203870 ~ 37216558 (+)
G27518 NA other downstream 6325992 38144984 ~ 38146850 (+)

Expression


Co-expression Network