AMCG00007839 (LOC108438531,LOC107714007,LOC108269325,LOC107654144)


Basic Information

Item Value
gene id AMCG00007839
gene name LOC108438531,LOC107714007,LOC108269325,LOC107654144
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 32325622 ~ 32356646 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007839
ATGGCCATACTTGTATGGTACACTATTGAGGAGATACCCATCAGCACAGATGTGCAACACATAAAGCGCAGAGACATTGTTCTGAAGAGAGAGCTGGGAGAGGGAGCCTTTGGGAAGGTCTTCCTGGCTGAGTGTTATAATCTCAGCCCCACTAAGGACAAGATGCTTGTAGCAGTGAAGACACTGAAGGACCCAACTCTTGCAGCAAGGAAAGACTTCCAGAGGGAAGCAGAGTTGCTGACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGGGTGTGTGTGGATGGAGATCCCCTCATCATGGTGTTTGAGTACATGAAGCACGGAGACCTCAATAAGTTCCTCAGAGCACACGGACCTGATGCCATGATCCTGGTTGATGGCCAGCCTCGTCAGGCCAAAGGGGAGCTGGGTCTGTCACAGATGCTGCACATTGCCACGCAGATTGCCTCAGGCATGGTGTATCTGGCATCCCAGCACTTTGTTCACCGAGACCTGGCCACACGGAATTGCCTGGTTGGGAACAGTCTGCTGGTGAAGATCGGTGACTTTGGAATGTCCAGAGACATCTACAGCACTGACTACTACCGGTCATCTAACCTGTAG

Function

NR:

description
PREDICTED: NT-3 growth factor receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007839 True 612 mRNA 0.51 5 32325622 32356646

Neighbor

gene id symbol gene type direction distance location
AMCG00007840 NA coding upstream 105950 32205006 ~ 32219672 (+)
AMCG00007838 NA coding upstream 506630 31816243 ~ 31818992 (+)
AMCG00007834 det1,LOC107654110,LOC107707445,LOC107701843 coding upstream 524958 31794973 ~ 31800664 (+)
AMCG00007829 LOC102800273,LOC107557431 coding upstream 642287 31664646 ~ 31683335 (+)
AMCG00007828 NA coding upstream 663030 31654997 ~ 31662592 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding downstream 35959 32392605 ~ 32398918 (+)
AMCG00007841 NA coding downstream 172156 32528802 ~ 32850205 (+)
AMCG00007845 klhl25,LOC106560960,LOC107714043 coding downstream 993448 33350094 ~ 33357685 (+)
AMCG00007846 NA coding downstream 1262657 33619303 ~ 33640336 (+)
AMCG00007847 LOC108243329,LOC107714027,LOC107654092,LOC100696938 coding downstream 1289873 33646519 ~ 33647508 (+)
G26645 NA non-coding upstream 502649 31822740 ~ 31822973 (+)
G26625 NA non-coding upstream 543731 31781638 ~ 31781891 (+)
G26483 NA non-coding upstream 1107300 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 1218373 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 1218998 31106414 ~ 31106624 (+)
G26698 NA non-coding downstream 265614 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 531144 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 1632400 33989046 ~ 33990588 (+)
G26825 NA non-coding downstream 1635532 33992178 ~ 33993982 (+)
G26875 NA non-coding downstream 1892550 34249196 ~ 34253554 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 885244 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 2506070 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 2600888 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 3319243 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 3414056 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 1406867 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 3254336 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 3939572 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 4847224 37203870 ~ 37216558 (+)
G27518 NA other downstream 5788338 38144984 ~ 38146850 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030478 ntrk2b coding NC_007116.7 CM002889.2 55626693 ~ 55689656 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_04943326_05005151 NTRK2, NTRK2A coding CI01000050 null 4943270 ~ 5005151 (-)