AMCG00007845 (klhl25,LOC106560960,LOC107714043)


Basic Information

Item Value
gene id AMCG00007845
gene name klhl25,LOC106560960,LOC107714043
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33350094 ~ 33357685 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007845
AAAGGCACTgagaacaacaaacaacaacaaagaatatGAATCAATTTGTCAAGCAAGAACGGGAAACCACCCGACTGTCTTTTTAACGGCCGCTTTACTGTGACTACTGTAACAGCACAGCCTATAGAGGGACCCCTGCTGGAATAGGCAGGACCGTACAGATGCAGGCTCACCCCCAACTTCTCACTGTCAGTGCTTGTGCCTGGGTCAGCAGTTTATGCCGGCTCAGACAATTAGGGAGCAACGAATCCCCAGACACATCTGAAACCATGTCGGTCAGCGTTCACGAGAATCGCAAGTCTCGCACCAGCACTGGCTCCATGAACATCTCTCTGTTTCACAAGCCATCTCACCCAGACAGTGTGCTCACCCACCTCAACACACTACGCAAACAGTGCATGTTCACTGATGTCACACTGTGGGCAGGTGATCGTTCTTTTCCTTGTCACCGGGCTGTGCTGGCCGCCTGCAGCCGCTACTTCGAGGCGATGTTCAGTGGTGGACTTCGCGAGAGCATAGACAGTGAGGTCAACTTCCGTGACAGTGTGCACCCTGAAGttctggagctgctgctggactTCGCTTACTCCTCAAGGGTCATTATCAATGAAGAGAATGCCGAGTCCCTGCTTGAGGCCGGAGACATGCTTCAGTTCCATGACATCCGAGATGCTGCTGCCGAATTCCTGGAGAAGAACCTGCACTCTTCCAACTGCCTGGGTATGATGCTGCTCTCGGATGCCCATCAGTGCAAGCACCTTTACGAGCTGTCTTGGAGGATGTGCCTAGTGCATTTCGAAGCATTGAGGGACACTGAGGACTTCTACAGCCTCTCCAAGGATAAACTCCTGGATCTGATCCTCAGCGATGAGTTGGAGATCGAGGATGAGCAGATCGTGTACAATGCCGTGATGCGCTGGGTACGCTATGACCTGGATAGCAGGAGGAATCATCTCCCTGAACTGCTGAGGGGCATCCGCCTGGCCTTGCTCCCTTCCGAATGTTTGGTGGAGGCAGTGGCCTGTGAGGAGCTTGTGGTGTCAGACAAACGGAGCAGGCAGATTgtagaggaggccattcagtGCAAGAAGAAGATCCTACAGAATGATGGGGTTGTCACTAGCCCCTGCGCCCGTCCCCGCAAGGCTGGTCATACGTTGCTCATTCTCGGCGGCCAGACTTTTATGTGTGACAAGATTTACCAGGTGGACCACAAAGCCAAGGAGATCATCCCCAAGTCGGACCTGCCCAGCCCTAGAAAGGAGTTCAGTGCCTGTGCCATTGGTTGCAAGGTCTATGTGACGGGAGGGAGGGGTTCTGAGAATGGGGTGTCCAAGGATGTTTGGGTTTATGACACAGTCCACGAAGAATGGTCCAAAGGGGCCCCTATGTTGATAGCTCGGTTTGGCCACGGTTCAGCAGAATTGGAGAACTGCCTGTACGTTGTTGGTGGCCACACAGCTATAGCAGGGGTTTTCCCAGCATCCCCTTCTGTGTCACTCAAGCAGGTAGAGAGGTATGACCCACTCACCAACAAGTGGACCATGATGGCTCCACTCAGGGATGGTGTCAGCAATGCAGCTGTAGTCAGTGCCAAGCTAAAGCTGTTCGTCTTTGGGGGAACCACCATCCACAGGGAAAAGGCCTCCAAGGTCCAGTGTTATGATCCTGTAGGAAATCGCTGGACTATTGCAGCAGAATGCCCCCAGCCATGGCGCTATACGGCCGCCGCCGTCTTGGGCAGCCAGATATTCATTATGGGCGGCGACACTGAATTCACAGCTGCCTCTGCTTACCGCTTTGACTGTGAGACCAACCAGTGGACGCGTGTCGGGGATATGACTTCCAAACGCATGAGCTGCCATGCAGTAGCTTCCGGCAACAAACTGTATGTGGTAGGGGGTTACTTTGGAACACAGCGATGTAAGACTTTAGATTGTTATGACCCTACCTCAGATAGCTGGAATAGTATAACCACAGTGCCTTACTCCCTAATTCCCACTGCGTTTGTTAGCACCTGGAAACATCTGCCTGCCTAACATCATCTGACTGAAAGTGAAAGGGTGAATGAAATTTGGtaagagatttttatttttcattctctttttcaggcattttctgtttctgtatgtaAAATTATCAGATTTATGCTAAGAAATGTTTTACTAAAGGAAACTATTTAGCATTCGAAGCATATTGGATTAGCAAAGATGATCTTGGCAATAAtgtaaaaatcttaaaaaataaaaagaataaaaataaatagtgg

Function

symbol description
klhl25 Involved in protein ubiquitination; regulation of translational initiation; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of Cul3-RING ubiquitin ligase complex.

NR:

description
PREDICTED: kelch-like protein 25 isoform X1

GO: NA

KEGG:

id description
K10462 KLHL25_37, ENC1, ENC2; kelch-like protein 25/37 (ectoderm-neural cortex protein)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007845 True 2269 mRNA 0.50 3 33350094 33357685

Neighbor

gene id symbol gene type direction distance location
AMCG00007841 NA coding upstream 499889 32528802 ~ 32850205 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding upstream 951176 32392605 ~ 32398918 (+)
AMCG00007839 LOC108438531,LOC107714007,LOC108269325,LOC107654144 coding upstream 993448 32325622 ~ 32356646 (+)
AMCG00007840 NA coding upstream 1130422 32205006 ~ 32219672 (+)
AMCG00007838 NA coding upstream 1531102 31816243 ~ 31818992 (+)
AMCG00007846 NA coding downstream 261618 33619303 ~ 33640336 (+)
AMCG00007847 LOC108243329,LOC107714027,LOC107654092,LOC100696938 coding downstream 288834 33646519 ~ 33647508 (+)
AMCG00007853 si:dkey-12e7.1,LOC105904526,LOC108427511,LOC103035474,LOC106573761,LOC107583743,LOC107738678 coding downstream 401018 33758703 ~ 33759842 (+)
AMCG00007857 igf1ra,igf1r,LOC101079603,LOC105904485,LOC106949861 coding downstream 509278 33866963 ~ 33870738 (+)
AMCG00007858 LOC107583745 coding downstream 582717 33940402 ~ 33984780 (+)
G26704 NA non-coding upstream 462054 32887790 ~ 32888040 (+)
G26698 NA non-coding upstream 727564 32622260 ~ 32622530 (+)
G26645 NA non-coding upstream 1527121 31822740 ~ 31822973 (+)
G26625 NA non-coding upstream 1568203 31781638 ~ 31781891 (+)
G26483 NA non-coding upstream 2131772 31218110 ~ 31218322 (+)
G26826 NA non-coding downstream 631361 33989046 ~ 33990588 (+)
G26825 NA non-coding downstream 634493 33992178 ~ 33993982 (+)
G26875 NA non-coding downstream 891511 34249196 ~ 34253554 (+)
G26895 NA non-coding downstream 908436 34266121 ~ 34266418 (+)
G26923 NA non-coding downstream 1268277 34625962 ~ 34626229 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 1909716 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 3530542 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 3625360 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 4343715 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 4438528 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 405828 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 2253297 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 2938533 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 3846185 37203870 ~ 37216558 (+)
G27518 NA other downstream 4787299 38144984 ~ 38146850 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_00329399_00333840 ENC1, CCIN coding CI01000071 null 329399 ~ 334484 (+)