AMCG00007846


Basic Information

Item Value
gene id AMCG00007846
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33619303 ~ 33640336 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007846
TCTGCTACTTTTGCAAGAGAAAGGGCACGCTTTGGAATTAAATGAGCAGGCAAAAGGAGTAATAAACACTGctattgtggtttatttttactttctaGTCTTATAAACTATTTTGTAAGAGaatgtttaacaaaaatgtcttctctttcagtttcagaatGTTGCCTTTTGCTGTGAACAAGAAGAGGTAGGGGATTCCTGTTGTGCCAACTAAGGCCTTACCGAAGAAGAACAGTGTGCTTGTATTTCGAGGTAGACAACTGGAACAGAAGCTGCCTAGCTAGTGCCCAGGGGAATTTCTAATATCTCCACCTTTCCTTGGTTTCCATTAATTGTGGGGGTAAATGAACTGCTGACAAACTGAGGAAGTAGGGCCAAAGGACTATGCCAATATAGTCACAGACGGCTACAAGGAATAAGTACAACGGCACTTTCTTTGTGTCTCTCATTCTGCAACCATGAATGACCCATACCAAAACAATTACTACCAGGGCTCCCAAGGGGGCAGCAACACATACTCCACTTTTGAGGAAGGGGGAGAAGGCCAGGATGGCTATTACCGGGGCAATGAGTATCCGGCACAGGACGAGGATGCGGCCAGTGACGCCACTGAGGGACATGATGAAGACGATGAGGTGTACGAGGGAGAGTACCAGGGCATCCCCCACCCAGATGACATCAAGGCCAACCAGAGGGCGGCACGGGCAGCAGCACGGGCGCAGGAGGTGGACGGGGTGGGGACGAAGATCCAGGACGAGGAGCAGTTGGCACACCAGTACGAGTCGATCATCGAAGAGTGCGGTCATGGGCGTTTCCAGTGGTCCCTGTTCTTCGTGGTCGGCCTGGCCCTCATGGCAGACGGAGTGGAGTGTTTTGTGGTGGGCTTCGTGCTACCCAGTGCTGAGAAGGACATGTGCTTGTCCAATGCCAACAAAGGGATGCTAGGGTTGATAGTGTACCTGGGAATGATGGTTGGAGCCTTCATATGGGGTGGACTGGCAGACAAAATGGGCCGTAAAAGGTGTCTGATAATTGCACTGGCCATCAACTCTGTCTTCGCCTTCATCTCCTCCTTTGTCCAAGGATATGGCCTCTTCCTGTTTTTCCGGCTCATCTCCGGCATTGGCATTGGAGGGTCCATCCCCATTGTTTATGCCTACTTCTCTGAGTTCCTGTGCCGAGAGAAGAGGGGGGAGCACCTGAGCTGGCTCTGCATGTTCTGGATGATTGGGGGCATCTACGCCTCCTCTATGGCCTGGGGCATCATCCCTCACTACGGTTGGGGATTCAGCATGGGCACGGAGTTCCAGTTCCACAGCTGGCGTGTGTTTGTGCTGGTGTGTGCTCTGCCTGCCATTGCCTCCCTCATTGGACTCACCTTCATGCCAGAGAGTCCAAGGTTTCTGCTGGAGAATGGTAAACACGATGAGGCCTGGATGATTCTGAAGCAAGTTCACGACACCAACATGAGAGCAAAGGGAGAACCGGAGAAAGTGTTCACTGTATCTCACATTAAGACACCCAAGCAGGAGGATGAGTTCATTGAGATCCAGAGCTCTACGGGGACCTGGTACCAGAGGTGGCTGGTTCGATTTATGACAGTGGTCAAGCAGGTGCTGCAGAATGTGCTGTCTCTATTCTCACCCCAGCTGCGACTGAACACACTATTTATGGCAATTGTTTGGTTTACTATGGCATTCAGTTACTACGGGTTAACGGTGTGGTTCCCCGACATGATCAAATATCTGCAGAATGAAGAGTACGAGTCCAAGGTCAAGCACTTCCATCGTGAACGTGTGGAGCACTTTACCTTCAACTTCTCTCTGGAAAACCAGGTCCACCATGAGGGAGAATATTTCAATGACAAGTTCACTAAAATAGAGTTGAAGTCGGTCACCTTTGAGGATTCTTTGTTTGAAGAGTGTTTCTTTGAAGACATCAGATCCACAGATACTTTCTTTAAGAACTGCACCATCATATCTACtatgttttacaatacagACTTGTATGAGGAGAAGTTCATTGATTGTAGGATGGTGAACAACACATTCATGCACTCGAAGAAAGGCTGCCACCTGGACTTTGAAGAGGAGAATGACATCCTCATCTACCTGGTCAGCTTCCTGGGCAGCCTGGCTGTGTTGCCTGGTAACATCATATCGGCACTCTTCATGGACAAGATAGGAAGGATAAAGATGATTGGGGGCTCCATGCTCATCTCATCTGCCTGCACTTTCTTCCTGTTCTTTGGCAGCAGTGAGTCTGCAATCATTGGCTGGCAGTGTCTCTTCTGTGGTGCAAGTGTGGCAGCCTGGAATGGCATCGAGGTTATCACTGTAGAGTTGTACCCCACTAGTAAAAGAGCCACGGCTTTCGGTGTGCTGAATGCCCTGTGCAAGTTTGCAGCCATCCTGGGGAGCTCCATCTTTGCCTCATTTGTTGGCATCACCAAGGTCATTCCCATCCTGATGGCCTCATCAGCGCTGGTGGCAGGAGGGCTGCTGGCTCTCAAGCTGCCAGAGACCCGGGAACAAGTCCTCATGTAAGCCGGCACAAAGTCAAAGGTCAGACCGAGGAGCAACTAACTGGCAGAGTCGGGGGAAAGACTGATACATGCAAGAGAAGCTGAATAGCTAGCGGGTGGACTTTATCATATCTATTTAGAGATACCTGACCATCAattatttctttcctttaacTTCCAATcagttggttttatttaatttctgtttagCGCATAtgttaaaacaacacacaaaataatagtAAGATTGAACAAGGCATTTTCTCTCTCATCACTTCTTTGTCAGTTTGATTGCTTTTtcatgtttagttttaaaaaatatacaacaaataTGTAAGAATGTAAGGGAAGAGGAAACTGataacaattaaatatgtatttgcttttGGAGAAAGGCAGAGTGTAAATTAAGTTTTCCACTTTCAAATGCAAACTTTAGTCTACTACCTTTCAAGAAacagtgaaatataataaagtatagTAGAGGAGACGTTTTCTAGGCCATTATGTCCAATGCAGTGTAacactttgtattatttgtatcagTCTATCCTTACGTGATGGGTGATTCTAACTGTTGTTCTAATAACCTGGAGTCTGTGCCATCCAACAACTGGCCATAGGAGAGGCCTCATTTTCCACAGTGCTGTTTCATGGTTTGGTGTTTGGTTTGGTTAATGCGTTACGTGAAATTCTGCTTCAAGTTTGAAAATCACACCTCATCAGTTCTTTGAACAGAAACTCGTCTGTGAGCTGTGTGTGAATCTAAAGTAGTCCCAAACTAATAGCTTACGCGTTTAGTCTAGGAAAGCATGACCCCTGGTGattaatttttgtaattgtattttcaagTTTATATATCCTCATGTACTGTATGTTGTCTTTCCTTTTGGTATGAAGACAACACCTGGATaagtgtaatgttttctttcaggaTATTATTTTGCTTAAGCAGAGGGAGAAACCCTTTTTAACTGATGTGCACTTGTGCAGCATTAAATATACTCTCAGCACCCCTTAGGTCTTTAGCAGAGTTGTAGTACAAGCTGGTATAGCTTTGGAAGTTGCCTGTAGTAATTAATAGGCCAGGATGCtaacaacattttaaagcaagtcACATGTTCCCATAGCTCCATTTCCATAGAACAACAGTTAGATTAGTTGTAAGCAGGGATGTATATGCTTACATTCTATTGGTCTGAACTAAAAACactatacttttattttctcaatcAAAGGCAATAATTTGTATCAAACTTCCTGCAATGAAAAGCTATATCTGTTAGTGTTTTAATGTCTTCTGTGTGCTTGTACATATGTTATGCCACAGCTTCCCTTGCATTGAATAGGTATCTGTTTCTTCCTGCAGTATTCCTATATTGAGACACTTACACCgcttttaatttagtatttgtccagatgttttcatttaaccCTGCCACAgcaatgttttagtttaataaagtgATACCAACAACTGTGCATCCTAATCCTAAGAAatgtaaaccaaataaaaaataatgataagtAAACAGAtaagttgtttaaaaaaaccATTTGATGTTAATAATCAGCTTTGTAAAACTAACCAGAAGTTTACTTGAGGGCAAAGAGGGAACGCCAGCtgcttaaaatgaaaaggagcACTGTCCATACCTTTAAAGAGATATCAGGTGAGATGCATGTTATTTCCAGCTAGTATCACTTGAAAATGAAGTATAAATGTccttttaaatgtctgtaattaaagaaaagaaaaaagtagtcTGAACTATTTTAATCATATGtctcactgtaaataaaagcaaGTCCACATGTAAAAGATTAGCCATCGCTGAGTTTACCGTCTGATCATTTAATTTAGAGATGCATTCATAAACTGCTTCTCACTTACAGCAGTTGCCAGTCAAAGCATGTTATCACTGGTTTCaggctttaataaaaaaagttaagaaCTACTCAGCTTTGATTTCACAAATGTAAACAAGATCATTACCCAATTATATCATATCTAATTAATACGTAATATACTAATCCAAACAGTACGTGATGCATTGCTTTGCATTTAATGTGACAAATGCAGGTACATTATTCAGATTTCTATTTCTTATCTTAAAAAGACAGTGAAGGAAACTCAACTGTTTAGGgtggaaaacatattttattgctgtatgactaacaatgaaataataataataataataataataataataataataataataataataataataataatacattgtgaatacatttaaagttttccaaccaaaaacaaatgtttgtaaGATCTAATGAGAAATTATGAATGAATTCTGGGAGATCCTCAGTTTTAATCATAGACATATTGTAGAATTAGATTTTGCCTCACTTCATATAAACCTGTCAAAACTATGATTTTATGTCTTACTATGTCCAATATTTAAACCATTTGCAAAGCATGCAGCAGTAACTGTAGCCCTTCAGAGCATAGCTACACCTAAATGTGTGCTGAGACTCGGGAAACTCATCCTACCTGAATGCAGTTTATCTTACAGACAGTATACATTCCCAACCAAGCCAATCCATGTGTTTTCTCAGGCATCTGTGTTTACTGTAATATCAAGGAATGGGCTTATGAATACAAgtgataaatgttttattttaaagttagtTCGTCAGTCTGTATGTCATGGTGTATGGAAAGCCAtaatatgttcttgtttttatatgttaattttaaaaagtgtgtctGATTGTTATTGGAAAACGGAGACGTGTGCTGACAatctttgattttctttatttttttttggttctgttttgtgtcagtccaaataaaaatatataaatata

Function

GO: NA

KEGG:

id description
K06258 SV2; MFS transporter, VNT family, synaptic vesicle glycoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007846 True 5365 mRNA 0.41 12 33619303 33640336

Neighbor

gene id symbol gene type direction distance location
AMCG00007845 klhl25,LOC106560960,LOC107714043 coding upstream 261618 33350094 ~ 33357685 (+)
AMCG00007841 NA coding upstream 769098 32528802 ~ 32850205 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding upstream 1220385 32392605 ~ 32398918 (+)
AMCG00007839 LOC108438531,LOC107714007,LOC108269325,LOC107654144 coding upstream 1262657 32325622 ~ 32356646 (+)
AMCG00007840 NA coding upstream 1399631 32205006 ~ 32219672 (+)
AMCG00007847 LOC108243329,LOC107714027,LOC107654092,LOC100696938 coding downstream 6183 33646519 ~ 33647508 (+)
AMCG00007853 si:dkey-12e7.1,LOC105904526,LOC108427511,LOC103035474,LOC106573761,LOC107583743,LOC107738678 coding downstream 118367 33758703 ~ 33759842 (+)
AMCG00007857 igf1ra,igf1r,LOC101079603,LOC105904485,LOC106949861 coding downstream 226627 33866963 ~ 33870738 (+)
AMCG00007858 LOC107583745 coding downstream 300066 33940402 ~ 33984780 (+)
AMCG00007860 NA coding downstream 360701 34001037 ~ 34010551 (+)
G26704 NA non-coding upstream 731263 32887790 ~ 32888040 (+)
G26698 NA non-coding upstream 996773 32622260 ~ 32622530 (+)
G26645 NA non-coding upstream 1796330 31822740 ~ 31822973 (+)
G26625 NA non-coding upstream 1837412 31781638 ~ 31781891 (+)
G26483 NA non-coding upstream 2400981 31218110 ~ 31218322 (+)
G26826 NA non-coding downstream 348710 33989046 ~ 33990588 (+)
G26825 NA non-coding downstream 351842 33992178 ~ 33993982 (+)
G26875 NA non-coding downstream 608860 34249196 ~ 34253554 (+)
G26895 NA non-coding downstream 625785 34266121 ~ 34266418 (+)
G26923 NA non-coding downstream 985626 34625962 ~ 34626229 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 2178925 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 3799751 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 3894569 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 4612924 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 4707737 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 123177 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 1970646 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 2655882 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 3563534 37203870 ~ 37216558 (+)
G27518 NA other downstream 4504648 38144984 ~ 38146850 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_01361532_01381534 SV2A coding CI01000027 null 1361288 ~ 1382766 (-)