AMCG00007847 (LOC108243329,LOC107714027,LOC107654092,LOC100696938)


Basic Information

Item Value
gene id AMCG00007847
gene name LOC108243329,LOC107714027,LOC107654092,LOC100696938
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33646519 ~ 33647508 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007847
ATGGATATCTCTGCTGCCCAGCTTAACTACAGCACCCAGTACCAGTGGAACTGCCAGAGTTCTGATTCTGAATTCTACAGCATTTCCTCTCCTGAGACCATCTCTCCAGCCTCTTCCATGGACTTTTCTCCATCATACCAGCCCTGTGGCTCCACAGTGGGTTCCCACTCTGCATTCCTCAGGGGAGTTCAGCCTTCAAAGTCCCCTTCTTCTTGTGAGGAAGGGCTGGTCTCCATGCAGCAGTTGAGAAAATCCAGGTCGAAGAATCCCAGCAAGCAAAGGCAGAGTGCCAGTGAGAAGGAGAAGATGAGAATGAGGGACCTGACCAAAGCCCTTCACCACCTGAGGACCTACCTGCCCCCTTCTGTGGCTCCAGCAGGACAGACCCTGACAAAAATTGAGACCCTGCGTCTCACCATCCGCTACATCTCCAACCTCTCCGCACAGCTGGGGCTCAGCGAGGAGGCTCTGTCCCAGAGAAGGGAGCTGGACATCTTCAGGTGCCACACTTCACCAGAGCAACTGGGGTGTTACCAGTACAACTCCATGCCAGAGTGCTGGGTGCAAGAACAGGCACCAGACCAGTGTCAGTACACCTCAGCTCCCTGCCCAGTGCAGGATACCAGAATGAGACACTTCCAGTTCAACACTGCACTGGACAACTCTGTGCAAGAAGACATCTTAAACTCAAGCACAGACTCTTCCTTACAATCACCACATTTTGCAGATACAATACAGTCATGCCAGATGTACAGCGAAGACCTCAGTCAAGTTATTCCACAAGAGTTCTGGATTTAA

Function

NR:

description
PREDICTED: mesoderm posterior protein 2-like

GO: NA

KEGG:

id description
K09076 MESP; mesoderm posterior

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007847 True 798 mRNA 0.52 2 33646519 33647508

Neighbor

gene id symbol gene type direction distance location
AMCG00007846 NA coding upstream 6183 33619303 ~ 33640336 (+)
AMCG00007845 klhl25,LOC106560960,LOC107714043 coding upstream 288834 33350094 ~ 33357685 (+)
AMCG00007841 NA coding upstream 796314 32528802 ~ 32850205 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding upstream 1247601 32392605 ~ 32398918 (+)
AMCG00007839 LOC108438531,LOC107714007,LOC108269325,LOC107654144 coding upstream 1289873 32325622 ~ 32356646 (+)
AMCG00007853 si:dkey-12e7.1,LOC105904526,LOC108427511,LOC103035474,LOC106573761,LOC107583743,LOC107738678 coding downstream 111195 33758703 ~ 33759842 (+)
AMCG00007857 igf1ra,igf1r,LOC101079603,LOC105904485,LOC106949861 coding downstream 219455 33866963 ~ 33870738 (+)
AMCG00007858 LOC107583745 coding downstream 292894 33940402 ~ 33984780 (+)
AMCG00007860 NA coding downstream 353529 34001037 ~ 34010551 (+)
AMCG00007863 lrrc28,LOC107706938,LOC107563201,LOC107662304,LOC107690794 coding downstream 397104 34044612 ~ 34052190 (+)
G26704 NA non-coding upstream 758479 32887790 ~ 32888040 (+)
G26698 NA non-coding upstream 1023989 32622260 ~ 32622530 (+)
G26645 NA non-coding upstream 1823546 31822740 ~ 31822973 (+)
G26625 NA non-coding upstream 1864628 31781638 ~ 31781891 (+)
G26483 NA non-coding upstream 2428197 31218110 ~ 31218322 (+)
G26826 NA non-coding downstream 341538 33989046 ~ 33990588 (+)
G26825 NA non-coding downstream 344670 33992178 ~ 33993982 (+)
G26875 NA non-coding downstream 601688 34249196 ~ 34253554 (+)
G26895 NA non-coding downstream 618613 34266121 ~ 34266418 (+)
G26923 NA non-coding downstream 978454 34625962 ~ 34626229 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 2206141 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 3826967 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 3921785 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 4640140 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 4734953 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 116005 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 1963474 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 2648710 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 3556362 37203870 ~ 37216558 (+)
G27518 NA other downstream 4497476 38144984 ~ 38146850 (+)

Expression


Co-expression Network