AMCG00007853 (si:dkey-12e7.1,LOC105904526,LOC108427511,LOC103035474,LOC106573761,LOC107583743,LOC107738678)


Basic Information

Item Value
gene id AMCG00007853
gene name si:dkey-12e7.1,LOC105904526,LOC108427511,LOC103035474,LOC106573761,LOC107583743,LOC107738678
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33758703 ~ 33759842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007853
ATGCCTCCTAGGAAGAAACCTCTCCACCTTGTAAGTAGATGTCGAAGGCTTCCCAAAGCTGAGCTAAATTGCTTCCCCTTCAACCTGCTGCCAGTGGAATGCCAGGTCCATGTGTTGTCATTTCTCAGCGAGGTGGACAAATGCAGCGCCGCCATGGTGTGCTGCAGCTGGAGTTGCCTGGTTCGCTCAGGGAAACTATGGAGGGTGGCAGACTTCTCACGACGGGGGGCTTTCTATTTGGGGCAGGAAGGATTGCTGGTGTCCAACCGTGAGTTTGAGCGGTGGAAGGCATGGGTCCATCACTATGCCCATCACCTTATCTCCCGCGGAGCCAGCCTGCTCACCTTGAAGGCCAGTTTCGACCTGGGAGACCATTACCACAAGTGGGGGGACTTGCTTTCTAACCTGCTGGAGAATGTCCACTGCAGAGATCTCAGCCAACTGGACCTCAACTGGACTTTCACGCTGTTGGAGCCCTTGGATCTCCGGCTTCAACCTGCCTCCAGCTCGAGCTCCAGCTCCCACCAGGAGAGTGTCACAAAGATGGACCAGGTCAATAACTTTCAGATCCTGCTCTCCAAGCTCTCACACAGCTGCCCTCGGATTGCCAGGATGCGCCTGCAGTTCGACTGGTCTGagatgtctgtctctctgctgaCACAGTTCCAGCATCTCCGTGTCCTGGAGCTCAAGTACTTCTGGGTGTTCAAAGGGGTTAGCCCCAGCTCCTTGCAGACACTGAGCAAGTCACTGCCTAACCTCAAGTCCCTAACACTTCATGTCTTGGTGCCTCTCAGAAACCTGGGCATCTCCTATACACTGGAGTCCCTCACCCTAGAGTTCCTGGATGTGTCCCAGAGTCGGGGCCTGGTCTTCTCCCGTCTCAATCTCCCTGCACTGAGGGAGTTCCGTGCGAAGAAGATCGTGCGAGGGATCACATTAGACCGTCGCACCAGGCTGAGGATACAGAGCCGTTGGCCTTGTCTGTACCATGTTCTGCGGGAAGGAACCCCAAAGCTGCAGACCTTGAACAGTGAGCGTCTGCTTCCCAACTGGAAGGAGCAGAGTTATCAGGAACTGACCTCTATCCTTCAGCAGTCCTGCTACTGTGTCCTGCACTTGGACAGCTGGCTGTGGTGA

Function

symbol description
si:dkey-12e7.1 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be part of SCF ubiquitin ligase complex.

NR:

description
uncharacterized protein LOC557553

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007853 True 1140 mRNA 0.55 1 33758703 33759842

Neighbor

gene id symbol gene type direction distance location
AMCG00007847 LOC108243329,LOC107714027,LOC107654092,LOC100696938 coding upstream 111195 33646519 ~ 33647508 (+)
AMCG00007846 NA coding upstream 118367 33619303 ~ 33640336 (+)
AMCG00007845 klhl25,LOC106560960,LOC107714043 coding upstream 401018 33350094 ~ 33357685 (+)
AMCG00007841 NA coding upstream 908498 32528802 ~ 32850205 (+)
AMCG00007837 ntrk3,LOC106573628,LOC107581857,LOC107573919,LOC108269325 coding upstream 1359785 32392605 ~ 32398918 (+)
AMCG00007857 igf1ra,igf1r,LOC101079603,LOC105904485,LOC106949861 coding downstream 107121 33866963 ~ 33870738 (+)
AMCG00007858 LOC107583745 coding downstream 180560 33940402 ~ 33984780 (+)
AMCG00007860 NA coding downstream 241195 34001037 ~ 34010551 (+)
AMCG00007863 lrrc28,LOC107706938,LOC107563201,LOC107662304,LOC107690794 coding downstream 284770 34044612 ~ 34052190 (+)
AMCG00007864 NA coding downstream 305289 34065131 ~ 34083321 (+)
G26704 NA non-coding upstream 870663 32887790 ~ 32888040 (+)
G26698 NA non-coding upstream 1136173 32622260 ~ 32622530 (+)
G26645 NA non-coding upstream 1935730 31822740 ~ 31822973 (+)
G26625 NA non-coding upstream 1976812 31781638 ~ 31781891 (+)
G26483 NA non-coding upstream 2540381 31218110 ~ 31218322 (+)
G26826 NA non-coding downstream 229204 33989046 ~ 33990588 (+)
G26825 NA non-coding downstream 232336 33992178 ~ 33993982 (+)
G26875 NA non-coding downstream 489354 34249196 ~ 34253554 (+)
G26895 NA non-coding downstream 506279 34266121 ~ 34266418 (+)
G26923 NA non-coding downstream 866120 34625962 ~ 34626229 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 2318325 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 3939151 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 4033969 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 4752324 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 4847137 28900058 ~ 28911566 (+)
AMCG00007854 NA other downstream 3671 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 1851140 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 2536376 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 3444028 37203870 ~ 37216558 (+)
G27518 NA other downstream 4385142 38144984 ~ 38146850 (+)

Expression


Co-expression Network