AMCG00007860


Basic Information

Item Value
gene id AMCG00007860
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34001037 ~ 34010551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007860
ATGTTGCAGTTTAGGAGAACCTTTGAGACCGAGAAGCTGCAGCTTCAAGAGCTCAATAAGAGGCTCAGTCAGTATCTGTCCAGGGTGAAGCAACTGGAGCAAGAAAATGCCTTCCTCATCACGGAGATCAGGACCATCCGGCAGCAGAGGACGGTGGAGGGGGAACATCAGCACATGGCCGAGCTCCGGGAGCTGAGGAAGACGGTGGGGCAGCTGGCTTTGGAGAAGTCCAGAGCCGAGATGGAGCGGGAGAAGCTCTGGCGAGAGTTCCAGCTGGTCCAGGCGCTTTGCTGTGAAGAGTCCGGGGTCTGCAAAGACATCCATGGGGACATGCAAGGGTGCGAGAGGGACTTAAACCAAGCCCTGAAGAAAAACGCCGCACTGGAAGAGCGCTTGTTTCAGCTACAGGATGAGTACAAGTCCCTGGAGGACATCCACAGGCGCGACATGGTCCATCTCCGAGAGCAGGTCCACTGCAGCGCCTTGCCTGTCTTCACCCAGAAGTACCAGGGCCCCCCAGCGCTCACCATGGAAGAAGTGGAGGAATACGCGCTCACCCTGTCCGAGTCCTGGATGGAGACGTTTGACGTGTACCGCAAGAGGGTGGAGGACCTGGAGGAGTCCATCCGGCTGGACGAGAGGAGACTGGAGGATCTGCGCCGGGAGAAGATGCAGTGCGCCTCCGAGTTTGAGAAGCTGCGGGCGGAGGCGGACAGGCAGGGCCAGCTGCAGATCCAGCTGGAGGACGAGCTCATTCACCTGCAGGACAACTTCGTCGTGCAGCTCGACCAGTACCAGGTGACCATtgagcagctggaggaggagcgcAAGGCGTTGGCCGCTGTTATTGCAGAGAAACTGAAAGACCACCAGGAGCTCATGCAGGTTAAGATGGGTCTCAGCTTGGAGGTTGCTGCCTACAGGGCACTgctggaaggagagagaagagatcTTTGGACAGATCAGTCCATCAGGGAAGCCCAAAGAACAACAGataTGAGGAAGCCAgttcacacatacacagcaaAGCAGTTTGTGAGCAGGCAAGATGGAAGGAAACAGTATCCAATCACCCCTCGTCCTGAAGTCAGATATAAGGAGCAGGCACCAATTGTGAATACAGCCTCCAGGTCAAGTCAGTTTAGAAGTTACGGAGTCACAGAATCTGTCCCAGTAAGTGTTTCCAGTCGAGTTCTGCAAAGTTCCACAGCCAGAAGAGACATTCCCTCTTTTGTCAAAGCCTCACAGATCTCCACTGCTTCCAAGACTGATCTCCCTCAAAGAAAGAGCACAGAAATCCAAAAGAAAATCATAGAAGAACAAACTGtgaacacaaaaaatgtagCAAATGCAACTGTTAACCTTCAGGGTTTGGCCAGTGCCTCCAGGACTAGCTCTGGGCTTTCACCCACAGCAGACAAGAAGTCCACAGTGGAAGAGATCCAGCGAAGAATGGTGAAAGTTACATCACCTAGTAAGATACAGGAAGAGAGCAGAGGGAATGTCAAAGACATCAAAATTGTTACTATAAAGTCTAAAGAAGAAAGTGAGAAATCACACGTCTTCCCTGTGAAAATGGCACCAGCTGTAGACAGTGGAGAAGTAAAGGTAACATTGCAGGGCCTTCAAAACCTCACAGGCGTCAAGAAAGCGGGCTTTGCAGAGGAAGAATTGCAAGGGCAAGTTTCAGATAAATACACTTGGGAATCAGAGATTAAACCTCACAAGGATGTTAAGCAGACAGTTCCAGAATACCAGCAGGACATGAAGAATGCAACCATTGAAGAAAGGATATTAGATACGATATCCATGCAAGAAATCCTTGACAAGGTGGTGAAACCAGCTGGTTTGGAAACAATGCTCAGCTCCTCCCCTGACTCCAAGATCACTTACCATATTGAGAAAATAAAGGGAGGAGATGGAAAAATGAAGACTGAGATTGTCCTGGAGTCTAAAGTACAGGAGAATTTGGACATCTCAGATGATTCAGTCCTGGATGAACTTCTCAACAAGGGGGTCAAGAAAGTTGCTTTGGAAGACATTAAGGGAACCCCAACCGGAAGCATGATTGAGAACCTTCTCAGTCTTGGCCTGAAGGAAGGAGAGAACCTGGAGAACAAGGCGGTCAATGTGGAGATCATTGAGGAACCCCTGGAGGCTCACAGTGATGAGGAAAATGAAGAGAATCCCCCACCTCAGTTCTCTAAGCCCTCATCAATGTTCTTCCAGATTGAAGAGTTGGAGAATGCTCCTCAGGCGGCCAAACCATTGGAGATCAGCACCGAATCCACAAAAGTCTCCATGCCCACTGGAGAATACAGGAAGGTTAAGCAATTTCAGCAAGGTGCCACTGACCTGAATTCTCCATTCATCACTCAGGTCCAAGAAACTGAGTATTTCGTCTCCACACCTGATGATAATCTTTCAGAGCACGAGGAGAGCGGATTTGCATCTTACGAGCAGTACGCAGTGGCCCATGACATATCTGCGGAGGACAGGTACTGGCAGGAGGAGCCAATGTCTAGCCATGGCCAAAGCTTTGCAGATGAAGACATTTACAGAACCACACATGTACATACAAGCATGAGAACAACTGGTGGTGAACACAGATTGGCCAGGGACAGTTTCCCTGAGTGTATCATAGAAGAAGAAGTTGAAGTCCCCCATGGAGTTCAGGAGTCGGTGCTCGAAATCTTGAAAGAGGATGCAGTGGATCCCAAGCAGCAGCTGAAAGGGGCTTTGGATCATCTCCAGGGTAAAATGTCGGACAATTTAAAAGAAGAATTTGAGATTTTGAACAGAAACGGTCAGGAGGGTTCTGACAACGTGGCAGTCGACATCAGAAAAGTGCAGCAGTCTTCAGACAGCGGCTTGGTCACCATTGttgcagaaatcaatgttcCCCAAAATCTAGAAGATTCGGGACTGTGGGAAAAACAGAATGTTGAGTCTTCTGAGGAGCAGATCATGTCAGGGCGACAGTTCGCCAATCCAGAAATGCACCCAGGAATCAGAGGCAAGGGAGGAGAAAAGAGTCTTTTCTCCTATGGGGATGATGACAGAGAGTTTACAGTTAAAGTCGGTAGAAATCAAGATGTGAGAGTGCAAGGTATGTCTTGGGTGTCTGAGAGCGAGGAACCAGAAAGCACCAGCACAGGGGAGTCAGTGAATGAAGTcaacaaaacagtcaaacaCATTAAACTAAGTCCTACTGAAAAGTCGTTCACTTTTCAGATGGATGTCACCAAGGTTACGTCGACAGCCACTAGCAGTGGCCCCCATGAAGCGCAAGTGTTCTACTCACAGGCTGAGCTCACTGAGGGAGCCAATGACAGGGAAGTGAGAGAGGGTGTCTACAGCTATGTGCAGAGGGTGACGGGAAGTGATGACGAGGGCCAAGTGATTTCCTTTGGCAATGAGAGGGAGGAACAGATGGAGATGTGGAATCCCAGCAAAGACCATACAGCTGAGCAGCATGCCTTTACCAGAGTGGTACAGACCCAAAGAATAGTGGATCCCCGTTCAGTGATAAGTGAGGAAAGGAAAATTGCAGCTATTTACCTTGACAGCACTGAGGAAGATTAG

Function

GO: NA

KEGG:

id description
K10376 DMN; desmuslin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007860 True 3585 mRNA 0.49 4 34001037 34010551

Neighbor

gene id symbol gene type direction distance location
AMCG00007858 LOC107583745 coding upstream 16257 33940402 ~ 33984780 (+)
AMCG00007857 igf1ra,igf1r,LOC101079603,LOC105904485,LOC106949861 coding upstream 130299 33866963 ~ 33870738 (+)
AMCG00007853 si:dkey-12e7.1,LOC105904526,LOC108427511,LOC103035474,LOC106573761,LOC107583743,LOC107738678 coding upstream 241195 33758703 ~ 33759842 (+)
AMCG00007847 LOC108243329,LOC107714027,LOC107654092,LOC100696938 coding upstream 353529 33646519 ~ 33647508 (+)
AMCG00007846 NA coding upstream 360701 33619303 ~ 33640336 (+)
AMCG00007863 lrrc28,LOC107706938,LOC107563201,LOC107662304,LOC107690794 coding downstream 34061 34044612 ~ 34052190 (+)
AMCG00007864 NA coding downstream 54580 34065131 ~ 34083321 (+)
AMCG00007865 LOC107715609 coding downstream 212348 34222899 ~ 34225641 (+)
AMCG00007866 mef2a coding downstream 230285 34240836 ~ 34249075 (+)
AMCG00007868 NA coding downstream 261212 34271763 ~ 34325416 (+)
G26825 NA non-coding upstream 7055 33992178 ~ 33993982 (+)
G26826 NA non-coding upstream 10449 33989046 ~ 33990588 (+)
G26704 NA non-coding upstream 1112997 32887790 ~ 32888040 (+)
G26698 NA non-coding upstream 1378507 32622260 ~ 32622530 (+)
G26645 NA non-coding upstream 2178064 31822740 ~ 31822973 (+)
G26875 NA non-coding downstream 238645 34249196 ~ 34253554 (+)
G26895 NA non-coding downstream 255570 34266121 ~ 34266418 (+)
G26923 NA non-coding downstream 615411 34625962 ~ 34626229 (+)
G26933 NA non-coding downstream 780205 34790756 ~ 34793855 (+)
G26934 NA non-coding downstream 783379 34793930 ~ 34794542 (+)
AMCG00007854 NA other upstream 206096 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 2560659 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 4181485 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 4276303 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 4994658 29003095 ~ 29006379 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 1600431 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 2285667 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 3193319 37203870 ~ 37216558 (+)
G27518 NA other downstream 4134433 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 4158019 38168570 ~ 38170146 (+)

Expression


Co-expression Network