AMCG00007861


Basic Information

Item Value
gene id AMCG00007861
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34011110 ~ 34042896 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007861
ATGGATTCACTGTCGAAGGAGCATCCAGCCCTGAAGGCAGTAGCCACAGCACTGTTAGCTCTGAAGGCCCCTGATCTTCTGCCTCCACTGGACGAGGCAGAGGGGATCCGCAGAGGGCACGATGCTGCCATCCAAGAACTGGCACGCTGCGTGGCCCTAACCCGGCTTGTTTATGGAGATGGCCACTGGAGACTGGCAGAAGCACATGCCAGGCTGGCTCAGGGATACCTGCAGCTGAAAGGACTGGCATTGCAAGCCCAGGAGCACACAGAGAAGGCCAGGACGGTCGCTGTCTCCAGCCCATTAGGTCCCCCAGATGGTGCAGAGAAACAGGGACTGCTGAAGTGTCTCATCACTATCTTCCACACGAAAGGAGGGGCTGCCCAACAGCTGGGCAAATATCCTTTTATCCCCCCAAGATTCCTCTGTCTAACAGAGATAAAGGGAACAGTGGCTATAGATGTTTCCTTAACACTGAGCACTCTGAAGGATGCTGAGCATTGCctggagagagcagagaggatTGTGGGGGAGCTTCAGAAGCTGGAAGGAGTGAGCAGGGAAGAAACGGCCAGTGCCGAGTGTGACATCGCCATGAGCTTTGCCAGgctgTACCAGAAGCAGGGGCAGTGGGCAGAGGCGCTGTGCCAGTGCGAGAGGGCCCTGAGGGTGGCAGAGGACAGGGCGGCCTGCTCAGCTCATTCCATGGCGCTGAGTCAGTGTCCGGCGGGGGGGCTGGAGGGGGCACACATTGCTCACAGCTTGGCTCTGGCCTACTCCACCGCTGGGGAGCCTGGGTACAATGacagtgcagtgcagttcttTGAGGAGAGTCTAAGTGGCTATCGGAGCTCCCTAAAACCCCAGGATCCCACAGTCCTCTCAGTGCAGGACGACTACTGCCGCTATCTCATCCTCTCTGGGAACCAAGAGAGAGCTGTTACCCTGCTGAAGGAATCTCTGCCCCTGAAAAAAGTGACATTTGGAGAGCTTAGTGTAGAGGTGGCAGAGACGTACCAGATCCTTGGAGGGGTGGAGATGGCCCAGTGTCACGTCAGGAGAGCCTACAAAACATTGAAGAAGtgCCTGGAGATTCAGAGCCTTCTGTTGGGCCCCCAGCACAGAAAGACCAGGAGCACACAGCGCACCGTGGACAAGCTGGCCAGGGCTCTGGAGGTTGGTGGGAGACGGCAGAACACAGGCAGTTTGAGAGACAGGCCTCCTTTTTGTGCTGTTGTGCCTTCCCATACTGAACTGGGAGGAGCAAAAGTCACTGATCATGGCTTGGACTAGCACAAGGGGAAGTTCTACACAAAttacaataagtaaatgtgtCCTTTAAATGGAAAAGTGATTGAGAATGGGAGAGCTGTATTTTACTAGGCTCTCGGAAGGTACATTTTTCTTCAGTACAGAGTTAAAATGAtcacatgtatatttttctaatatCTTCTTCTGAggtgtgtattttgttaatgaaCATGTCTGCTCCAATCTGACCACAAAGGGAGTTGGGTAATTTGGTTCTAATCTGGACATTGGATGCACAGCTCCACGCAGTGAAAGGGCATCACGTTTTCATGACTACTTCAAACAACTAATGGATCTGCATTTCCACTCTGCTATTAAAGACAATATCAAGTTCAAGACTCATTTGGAGGAGTGCCTTGAAAACTGCATGGAGTTTTGCACGTCTTCACCTGGACCCcataacaaaacaagaaaggcAACTTCTGAGTGATTGTGGACAAAACGCATTGGGCACTCTATTGCAATGTTCTCAGTAAAGCATCTAATTAATTTGCAGGAGGAAAACGTGACCATAGTTAAACTTGAAAACTTTAAATATGGCATTAAAAGAGCTGAGAAGAGGTATGTTGGGAAATCTAACAGCACTACAGGGTGAactgaaatattgtttcaatgGACTGAGGcataacagaacaaaacagaacttCACTATAAGAACAACACAGACTCGGGAGCAAGCTTTcatgacttgtttttttattattttttaacactaaTTTGTGCAAAGACAATTGTGTAAAATGCCAAGCTGccaaatatatgaaaatgttttcaatttgctTAATGAAGAAATTAAACGGATGCAAAAGCCTTTTTTTCATTGAAAACCTAGCCTCCCTCTTCCAGTGTACACGAGATAGTAATCTGCCAGATACAGAGCCAGAATCCGGGGGTGGGGCGCAGGGGGATAATTTGGTTCACAAGCcaacccctccctcccccttgTAAAATGTCTCTAAACAGAGCTTAACTATTCCTGTTGAACAATTTTAAATCAACCCTTGATAAGATTTCACCTTGGACTGCACTGATAAAAATAGGCTAGTATCTGCAGTTAATACCAGTTACACTGTTTCAGAGACTCACTGCAAAGTTATTTGCATTGCAAGAGATATTTGTTAACCATACTACTAGTGCTGCAGGACTACAGGACTCAGTTAAGGTGTTTGAGATCACCAGCTGAGCTGTCATTTCCCAGTGTGTTCAAAAGGACCACAGCATTAAAAGGGGACCTGCTACACAGTGagtgttgttaatgttatttaacaaCAGGAATGGCTAATACAGGTAGTGTGTAAACTAATGCAATGAGGGAAAACTCCCTGAATGCAAATGTGTGTCCTGTAGTGTATAAACCACACTGGTGCATGAAAAGGAAGTAATGTTAATATTCACACAATAATTCGACTTTTAATTCATGTTGTTCAAGCCTGTATTCTTGGGGGGATGTTTTTGCAGGACATGCACAAACTAGGCAGTACTCATCCGAGCGTTCTCACTTGAGGTGCACagtcaaaagaaagaaatcagtCCAATCTAAATAATTCAATACTGTTAATACTTTTTCTAGGAACAGCAGTTGCCATTTTGTCTGCGGACTGATGATTCAAACTTCCAGTATCAATTCCACCTGTGTAAAATACCGATGCAGTTTCTTTGGCAGATTGCACACAGCTCTTGAGGAATCCTGTGCTGCAAGTCCGATTTACAGACTAGGAACTGCACATGACAAGAAGTAGTGAGAGAATAATGAAAAGGTGCTGATGAAGCTATACTTACACAATATTTGCaactttaaatgcatctgaTGAGGTCACATTCATTACATTcagcatgtgtgtttgtataacTATTgcaaacagcacagcactactttgtttcttttcagaatTCCAactaatttttaatttgtgcatttgCGGTTAAAAAAAGCACCCAATTCTGTTCTCCTGTGTAACTCGGATTTTGTAGTCCATACAACCCTTTAATTTAATGGAATAAATTCaatgtcaatttatttatttagctggtTTCCAGAGACTACAAACCAGGCTTCAAAAGCAGTAGggcacactttacaataatagGCACCGTTTCTTAATGAATTgctgtatgaataccacaggaataacacattaatCAATTTTGCACTTCATGCGTTTTGCCGATAAGCtcatgtataacaaggttagggtcagggttaggaAAAGGGTTACAGACTCAGTTTGGGGTTTGGGCTTATACAAGTGatcaacagcagaactcagtgGAAATGCGTGAGGCATTCTggtgggattcatacattcattcattaaaaatgcatgccCATTATTATAACGTGTTCCCAACACTAGAATTTCAGGAGCTCAAAGTGTTTGATTTCTAGTTGTTCAGGATAAGTGTATTTAGGCTTATGAGAGGTTCTGGAATAGCTAAAGCCATTATGTAAACACAACTGTGGGTCACACGTGCTGTGGATTAGTGAAACCTTGCACCCAAAATAACCACAagtaaaaaaattgaattttaaaaagcatgctTTGAGGTTCCAGCCTGCTTTATTCCATAGCAGcgtcaaaaagaaaataaactatcTGTGTTGCAAGCACACTGTAGCCTTAAGTGTTCCCCTAGTCACAAGGACAATGGTAGAACACATGCTAAAAGCTTGTACCTCTAATGCAATTTAAGGATTACAAGATcaacacagtaaaacaaaaagaagaaactaAAACCTTCATTCTGGAAAGGGTTTCTTACTGTAACACAAAATACCGACCACAAACTGATCAGACCCTTAAACCACATACTTTTAATCAGaagttatattcatatatatttatgtatttcttcacaTGAAAAAGTTACTAAATACTCCTATTCTTTGTCAAACACTTGTAGGGGATGAATCACTCCGTTATTCCCATATAAAGCTGTAGTAAATTACATCTGCTGTCCTCAAGTCACACCCTCTGTTGATGGACTGTCTGCAGTACTACCGAGCCAAAACAGGCCAGAGGTGCCAATGAAAGTGACATAATGTCCTACTAAATATTATAGGACCAGGAGAGAAATGTCCCAAACACATACTCTCAATATGTTCATACAGACACAGATTACTAAACAGAGATAGGAAATGGCTATATATGTATGTCACAGGTGATTTCAAGCATTTGAGATTGCAACATACATGAAACGTTATACGAAAAGGCATGTATGTTACACACCTTACTACAAAagcttttatgtatgtatatatacagctctggaaaaaattaagagaccactccaagttctgaaatcaatgttaaatgatctctttttccagagctgtatatatattt

Function

GO: NA

KEGG:

id description
K24934 TTC23; tetratricopeptide repeat protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007861 True 4655 mRNA 0.43 11 34011110 34042896

Neighbor

gene id symbol gene type direction distance location
AMCG00007862 NA coding downstream 11372 33995712 ~ 33999738 (-)
AMCG00007859 NA coding downstream 73030 33922475 ~ 33938080 (-)
AMCG00007856 NA coding downstream 197177 33800570 ~ 33813933 (-)
AMCG00007855 NA coding downstream 213350 33790191 ~ 33797760 (-)
AMCG00007852 ap3s2,LOC101163313,LOC107581850,LOC107372361,LOC107654134 coding downstream 254090 33755856 ~ 33757020 (-)
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding upstream 753999 34796895 ~ 34804878 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding upstream 1513354 35556250 ~ 35594137 (-)
AMCG00007875 NA coding upstream 1582914 35625810 ~ 35637920 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding upstream 1606948 35649844 ~ 35665471 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding upstream 1675128 35718024 ~ 35735817 (-)
G26848 NA non-coding downstream 17152 33992135 ~ 33993958 (-)
G26847 NA non-coding downstream 23119 33986547 ~ 33987991 (-)
G26800 NA non-coding downstream 285214 33725582 ~ 33725896 (-)
G26764 NA non-coding downstream 370774 33592222 ~ 33640336 (-)
G26684 NA non-coding downstream 1593610 32413280 ~ 32417500 (-)
G26883 mef2a non-coding upstream 146600 34189496 ~ 34223231 (-)
G26893 NA non-coding upstream 206303 34249199 ~ 34253565 (-)
G26943 NA non-coding upstream 753273 34796169 ~ 34796853 (-)
G26952 NA non-coding upstream 773798 34816694 ~ 34816920 (-)
G26994 NA non-coding upstream 1488034 35530930 ~ 35531438 (-)
AMCG00007835 LOC107594750 other downstream 2194959 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 2668318 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 2764461 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 4997163 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 5089987 28894693 ~ 28921123 (-)
G26961 LOC101154678 other upstream 826539 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 1960297 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 2799579 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 3197188 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 3452015 37494911 ~ 37499392 (-)

Expression


Co-expression Network