AMCG00007866 (mef2a)


Basic Information

Item Value
gene id AMCG00007866
gene name mef2a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34240836 ~ 34249075 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007866
ttctctctctcccgtATTTGTGCTGCCACAGGGAATGGTTTTGTGAATCCACGGGGCTCCCCTGGGCTCTTGGGCACTCCTAGTGGGAATGGGCTGGGGAAGGTCATGCCCACGAAGTCTCCGCCTCCTCCTGGGGGGAACCTGGGAATTGGCAACCGCAAACCAGACCTGCGTGTCGTCATCCCGCCCTCCAGCAAGGCCATGATGCCCCCGCTGAACGCCCAGAGGATCAGCAGCTCCCAGTCCACTCAGCCGCTGGCCACCCCCGTGGTGTCGGTCACTACACCCAGCCTGCCTCCACAGGGCCTGGTGTACTCTGCCATGCCCACTGCCTACAACACCGATTACTCTCTGAGCAGCGCGGAGCTCTCAGCCCTGCAGGGTTTCGGCTCCCCAGGAGGCCTGTCGCTGGGCTCCATGTCCTGGCAGCAGCACCAGCTGGGGCAGGCTGCGCTCAGCTCGCTGGTCAGTGGCGGTCACTTACCTCAGGGTTCTAACCTCTCTATCAACACCAACCAGAACATCAACATCAAGTCTGAGCCCATCTCTCCACCCCGCGACCGCGTCACGccctccggcttccccgcgcaGCCGCCCCCCTCCTCCCGGCAGGACATGGGCCGGTCGCCCGTCGATAGCCTCAgctcctccagcagctcctATGATGGCAGTGACCGCGAAGATCACCGGGCTGACTTCCACTCTCCTCTGGGCCTGGGAAGACCCCCAGCAGGAGGGGATGACCGGGAGAGCCCGTCTGTGAAGCGTATGCGCATGGACGCCTGGGTGACATAA

Function

symbol description
mef2a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein heterodimerization activity. Involved in several processes, including ERK5 cascade; positive regulation of cardiac muscle hypertrophy; and regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of transcription regulator complex. Implicated in dilated cardiomyopathy.

NR:

description
PREDICTED: myocyte-specific enhancer factor 2A isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007866 True 795 mRNA 0.64 4 34240836 34249075

Neighbor

gene id symbol gene type direction distance location
AMCG00007865 LOC107715609 coding upstream 15195 34222899 ~ 34225641 (+)
AMCG00007864 NA coding upstream 157515 34065131 ~ 34083321 (+)
AMCG00007863 lrrc28,LOC107706938,LOC107563201,LOC107662304,LOC107690794 coding upstream 188646 34044612 ~ 34052190 (+)
AMCG00007860 NA coding upstream 230285 34001037 ~ 34010551 (+)
AMCG00007858 LOC107583745 coding upstream 256056 33940402 ~ 33984780 (+)
AMCG00007868 NA coding downstream 22688 34271763 ~ 34325416 (+)
AMCG00007867 NA coding downstream 99412 34348487 ~ 34353634 (+)
AMCG00007870 NA coding downstream 973389 35222464 ~ 35228724 (+)
AMCG00007871 NA coding downstream 1071544 35320619 ~ 35323890 (+)
AMCG00007872 LOC106561144,LOC106573775 coding downstream 1288486 35537561 ~ 35548907 (+)
G26825 NA non-coding upstream 246854 33992178 ~ 33993982 (+)
G26826 NA non-coding upstream 250248 33989046 ~ 33990588 (+)
G26704 NA non-coding upstream 1352796 32887790 ~ 32888040 (+)
G26698 NA non-coding upstream 1618306 32622260 ~ 32622530 (+)
G26645 NA non-coding upstream 2417863 31822740 ~ 31822973 (+)
G26875 NA non-coding downstream 121 34249196 ~ 34253554 (+)
G26895 NA non-coding downstream 17046 34266121 ~ 34266418 (+)
G26923 NA non-coding downstream 376887 34625962 ~ 34626229 (+)
G26933 NA non-coding downstream 541681 34790756 ~ 34793855 (+)
G26934 NA non-coding downstream 544855 34793930 ~ 34794542 (+)
AMCG00007854 NA other upstream 445895 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 2800458 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 4421284 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 4516102 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 5234457 29003095 ~ 29006379 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 1361907 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 2047143 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 2954795 37203870 ~ 37216558 (+)
G27518 NA other downstream 3895909 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 3919495 38168570 ~ 38170146 (+)

Expression


Co-expression Network