AMCG00007872 (LOC106561144,LOC106573775)


Basic Information

Item Value
gene id AMCG00007872
gene name LOC106561144,LOC106573775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35537561 ~ 35548907 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007872
ATGGGGAAAGGGGCAGGACCTTCGGCGCTAGAAGTCGGCAAGATCCTCACGGTCTTTCTTTACCTTTTTCCGGCAGTGAGTCTGCAGTGCAAGATCCTGAAGTGTAACTCGGAGTTCTGGGCCTCCACCTCCAGCTCCGGCCCCGAGGAGGAGTTCTGCACAGCACTGAGAGCCTACAACAACTGCGTCCGGCGGACCGCGCGCACCTGCCGAGGGGACCTGGCTTTCCACTCGGCCCAGCACGGCATCGAGGATCTCATGAGCCAGCACAACTGCTCCAAGGAAGGCCCAACCTCCCAGCCCCGGCCCCGCACCTCTCCGCCACCCAGACCCGACAGCCAGGAGCGCTCCGATGGCCCAGAGATCTGCCACTACGAACGCAGCTTCCACAGGCACTCGGCGCCCCCCAACTACACTCACTGTGGCTTCTTCGGGGACCCCCATCTCCGCACCTTCGCTGACGACTTCCAGACCTGCAAGGTGGAGGGAGCCTGGCCCCTGATCCATAACAAGTACCTATCGGTGCAGGTCACCAACACTCCGGTGCTGCCCGGCTCCTCTGCCACCGCCACCAGCAAGctcACCATCATCTTCAAGAACTTCCAAGAATGCGTAGATCAGAAGATGTACCACGCGGAGACGGATGAGCTTCCAGCTGCCTTCGCAGACGGCTCGAAGAACGGAGGCGACCGTCACGGTGCCAACACTCTGCGCATTGTGGAAAAGGTACCTGGGCAGCACGTGGAGATCCAGGCCAGGTACATCGGCACCACCATCGTTGTCCGGCAGGTGGGGCGGTATCTGACATTTGCTGTGAGGATGCCAGAGGAGGTGGTGAACTCCGTGGAGGACAAGGACAACCAGGACTTATACCTCTGCCTGCACGGCTGTCCACACAACCAACGCATTGACTTCCGGACCTTCAGGGCCCGGGCAGCCGAGAGTCACACCCACGCTGGCACTGGAAGTGGGGGCAATAGGGCACCTTTGCCACCACAAGGCTTCACTTATCAGTCGGCCACGTCTAAGTGCAAGGAGAGGCTGCCAGTGGAGGATATGTATTTTCAATCCTGTGTCTTCGACCTGCTGACAACAGGAGACGTCAACTTCACCATGGCGGCCTACTACGCCTTTGAGGATGTCAAAATGCTCCACTCCAACAAGGACAAGTTCCACATCTTCGAAAGGACACTAAATGTGGGGAACGCAGCCCCCAGGGAACCCAGTtctgcatctctctgtctccttaACTTTTTAGCCTTGCTCTTGTGGATTCAGTGCTGTTTGGTGCATCTATAG

Function

NR:

description
PREDICTED: repulsive guidance molecule A-like

GO: NA

KEGG:

id description
K23096 RGMA; repulsive guidance molecule A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007872 True 1299 mRNA 0.59 3 35537561 35548907

Neighbor

gene id symbol gene type direction distance location
AMCG00007871 NA coding upstream 213671 35320619 ~ 35323890 (+)
AMCG00007870 NA coding upstream 308837 35222464 ~ 35228724 (+)
AMCG00007867 NA coding upstream 1183927 34348487 ~ 34353634 (+)
AMCG00007868 NA coding upstream 1212145 34271763 ~ 34325416 (+)
AMCG00007866 mef2a coding upstream 1288486 34240836 ~ 34249075 (+)
AMCG00007878 si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031 coding downstream 262819 35811726 ~ 35815067 (+)
AMCG00007881 NA coding downstream 311724 35860631 ~ 35931488 (+)
AMCG00007884 NA coding downstream 468780 36017687 ~ 36019684 (+)
AMCG00007888 NA coding downstream 736076 36284983 ~ 36294189 (+)
AMCG00007892 NA coding downstream 855761 36404668 ~ 36425781 (+)
G26978 NA non-coding upstream 247316 35290036 ~ 35290245 (+)
G26960 LOC101154678 non-coding upstream 667839 34869444 ~ 34869722 (+)
G26951 NA non-coding upstream 722172 34815160 ~ 34815389 (+)
G26935 NA non-coding upstream 741466 34794600 ~ 34796095 (+)
G26934 NA non-coding upstream 743019 34793930 ~ 34794542 (+)
G26993 NA non-coding downstream 1935 35550842 ~ 35552503 (+)
G26998 NA non-coding downstream 7238 35556145 ~ 35559559 (+)
G27021 NA non-coding downstream 46506 35595413 ~ 35603182 (+)
G27025 NA non-coding downstream 59516 35608423 ~ 35608637 (+)
G27052 NA non-coding downstream 258461 35807368 ~ 35842842 (+)
AMCG00007854 NA other upstream 1742620 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 4097183 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 5718009 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 5812827 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 6531182 29003095 ~ 29006379 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 62075 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 747311 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 1654963 37203870 ~ 37216558 (+)
G27518 NA other downstream 2596077 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 2619663 38168570 ~ 38170146 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012813 rgma coding NC_007129.7 CM002902.2 24919614 ~ 24932329 (+)