AMCG00007874 (chd2,LOC107715217,LOC107690375)


Basic Information

Item Value
gene id AMCG00007874
gene name chd2,LOC107715217,LOC107690375
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35556250 ~ 35594137 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007874
GAGCTCTAGATGGCGGCTGAGCCTTGGAGAGGAGAGCGCATTGAGAGTAGCTGAGCTTCTCCAACACTTTGTGTAACTTTTAGCAACTTTTAGGCCGCCGCAGGGGCCAATGATCTGCATTATTAGTAAATTTAGCTTCCTTACGTCTTATTTTATTCGGAAAAGAGTGAAGCCTTTTGTTAGATTTCGATGCCTTTACCGAGAGGAGAAATACAGTACAGTCTATGTGCGAGTCGTTGTTTTCCCAGCTTAGCACGGCAGCCATGGCGCACCTCCATTTTTAGTGCGCTCTGCTAGGCTGCTTATCCGCCTCTTATTTCATCAATACTAGCTTAcgattacatgtttttatttgtattgaataaaacaataatctgtcgatatatgtatatatatttgaaacgGAATATTTGCTTTTGGAAACCCAATAACGGAATAAAGGACTTCATTGACAGACTGGAAAGCAACACTTCATTCTACCTGTCTGTACATGGAAGAGTAAATACCaggacataagaacatcagaaacaaAAGTTTTCAGGATACAAAGATGATGaagaataagaacaaaaaagcTGAAGATGACGGGTCGACCCAAAGCAATGCATCAAGCAATTCTGCTTCAGAAGAATCAAACCACTCGGTGTCGGAGTCTGGGAGTCAGTCGGAGAGCGAGCAGGGCAGCGAGCGAGGCAGCGTCGCACGTGGCACCGAGTCCAACAGTAGCTCTGAGTCGGAGAGCCAGTCCGATTCAGAGTGCGAATCGACAGGATCCAAATCCCAGCAAGCCTCCTCTGAGATGAAGGATAAGCCAGTCAGCAAGAAGGATAGATTAGCAGATGTTAAGAAGATGTGGGAAGAACATCCAGATGTTTATGGGGTCAGGAGGTCGAACCGGAGCAGACAAGAGCCTGCTCGTCTTAATTTTGGAGCGGAGGGCAGCAGCGACTCTGAAAGTGAAAGTCCTAAAAGGAAAGGATTACGACCGAAGAAGGCAAAAGAAAATATCTGGAAAGATGATGGCTCTAATGACGAAGaagatgaggatgaggatgaggatggtGATGAGGATGAGGAGGTGGATGCCAGCAGTTCAGAAAGTGAGCAGGAAGAGAGAAAAGTTAGATCCAGACGACCTCCAGCCAGAAGtTATAAAGAGGATGAGGATGACTTTGAAACAGACTCTGATGACCTGATAGAAATGGCAGGGGAGGGCACAGAAGAACAGCAGGATGACAGCGAAACCATTGAAAAGGTCATGGATGCCAGGACTGGAAAAAAAGGAGTCACAGGGGCCTCAACGACGGTATATGCAGTGGCAGCCAATGGCGATCCGGGTGCCGACTTTGACCCCGAGAAGGACGAGGGAGAGACGCAGTACCTCATCAAGTGGAAAGGCTGGTCATACATACACAACACGTGGGAGAGCATCGACACCCTCACCCTGCAGAAAGTCAAGGGACTGAAGAAGCTGGAAAACTTCAAAAAGAAGAACGATGAAATCAACGCATGgCTGTCCAAAGCATCCCCTGAAGATGTTGATCATAAGACCTCCACCTCCAATGAACCGGAGTACCTGTGCAAATGGATGGGTCTTCCCTATGCTGAATGCAGCTGGGAAGATGGCGCTCTCATTGGGAAAAAGTTCCAGCACTGCATAGACAACTTCAACAACCGCAACGCCTGCAAAACTATCCCTTTTAAAGactgcaaagTATTGAAACAGAGGCCAAGGTTTGTTACATTGAAGAAACAGCCATCGTACATCGGAGGAGAGAACCTGGAGCTCAGAGATTACCAGTTAGATGGTCTGAATTGGCTGGCCCATTCGTGGTGCAGGGAGTTTGATATCTGGGCCCCCGACATGAATGTAGTGGTGTACCTTGGGGATGTCATGAGCAGGAAAACGATCCGTGACTATGAATGGGTTCACTCACAGACAAAGAGAATGAAGTTCAATGCACTTTTAACCACCTATGAAATTCTACTGAAAGACAAGACAGTGTTGGGCAACATAAACTGGGCATTCCTGGGAGTCGATGAGGCCCATAGACTGAAAAACGACGACTCTCTGCTGTACAAAACCTTGATTGACTTCAGGTCCAACCATAGGCTGCTCATCACAGGGACACCACTGCAGAACTCTCTGAAGGAGCTCTGGTCACTGCTGCACTTTCTCATGCCTGAAAAATTCGAGTTGTGGGAGGACTTTGAAGATGAGCATGGCAAGGGGAGGGATAATGGCTATCAGAGTCTCCACAAAGTCCTGGAGCCCTTCCTCCTGCGCAGAGTCAAGAAGGATGTAGAGAAATCCTTGCCTGCTAAGGTGGAGCAAATCCTCAGGGTGGAGATGTCAGCCCAGCAGAAGCAGTATTACAAGTGGATTCTGACTAGGAATTACAGGGCCCTCTCCAAAGGGACGAGGGGAAGTACCTCTGGTTTTCTCAATATTGTCATGGAGTTGAAAAAGTGCTGTAACCATTGCTATCTGATCAGGCATCAGGATGAGAACGAAACAACCCAGCTGGAACACTTGCAGGCGCTGGTCCGAGGCAGTGGGAAGCTCGTGCTCCTGGACAAGCTGTTGACGAGGCTCAGGGAGAGAGGCAACCGGGTCCTCATCTTCTCCCAGATGGTGCGGATGCTGGACATCCTAGCAGAGTATTTGGCCATCAAGCACTATCCGTTCCAGCGCTTGGATGGTTCAATAAAAGGAGAAATACGAAAACAAGCACTTGATCACTTTAATGCTGAAGGCTCTGAGGACTTCTGTTTCCTGTTATCCACACGCGCAGGAGGCTTGGGGATTAACCTGGCTTCCGCGGACACTGTGGTCATCTTTGACTCGGACTGGAACCCTCAGAACGACTTGCAGGCACAGGCCCGGGCCCACAGGATTGGGCAGAAAAAGCAGGTGAATATTTATCGGCTGGTAACCAAGGGGACAGTAGAGGaagacatcattgaaagagccAAGAAGAAGATGGTTTTGGACCATCTTGTCATCCAGAGAATGGACACGACTGGACGGACAGTGCTGGACAACAACTCAGGAAATTCAAACTCAAATCCATTTAACAAAGAGGAGCTGAGTGCTATTTTAAAATTTGGAGCAGAGGAACTTTTCAAGGAACCCGAAGGCGAGGAGTCGGAGCCTCAGGAAATGGACATAGAGGAGATTCTGCGCCTGGCTGAGACCCGAGAGAGTGACCCGACAGTGAGCGCCACCGATGAGCTGCTGTCTCAGTTTAAGGTGGCCAATTTTTCCACGATGGAAGAGAGTGCCCCTGAGCTGGAGGAGAGGCAGACCACAGACTGGGACGACATCATCCCTGAGGACCAGAGGAGGAaggtggaggaggagcagaAGCAAAAGGAGATGGAGGATATTTACATGTTGCCCCGGAGCAGGAGTTCCACCAAGAAGGCTCAGGCAAACGACAGTGACTCCGATGTTGGCTCCAAGTTAAAACGGAGGTCTTCAGGCTCGGAAAGCGAGACCGATGACAGCGACGACGACAAACGGCCGAAGAGAAGGGGTCGGCCACGTGCACGTAAAAACAATGTTGAGGGCTTCACAGACGCCGAGATTCGCCGGTTCATCAAGGCGTATAAGAAGTTTGGAGCGCCTCTGGAAAGGTTGGAAGCCATTGCTCGTGACGCCGAGCTGGTTGATAAGTCCATTGCTGACCTGAAGCGCTTGGGGGAGCTCATTCACAACAGCTGTGCAGCAGCAGTACAAGAACACGAGGAGCACCTGAAAGAAAACCCCAGCGAAGCTAAAGGCCCAGGGAAGCGGAGAGGTATCACCATCAAGATTTCAGGAGTGCAAGTCAATGCCAAGTCCATAATTCAACACGAGGAAGAGTTTGAGCCGCTGCATAAAGCCATACCTGTTGACACCGAGGAAAGGAAGAAGTTTCAGCTGCACTGTCGCGTGAAGGCTTCCCATTTTGATGTGGACTGGGGTGTGGAGGAAGACACTCAGCTGTTGCTGGGGATTTATGAGCATGGTTACAGCAACTGGGATCTAATCAAAACTGACCCAGATCTCAACCTGGCCAATAAGATTCTGCCAGACGACCCTGAAAAGAAGCCCCAAGGGAAGCAGTTGCAGTCCAGAGCCGATTACCTCCTCAAGCTGCTGAAGAAGGAGCTAGAAAATAAAGATGCCTCTGCACAAGGGGATGAGGTCAGTAAAGAGACCAAAGTCAAGAAGAGGAAACCCAGattgaagaaggaaaacaagGCACCCAAGGATGAGCATGGAAATGAGATCTCCTCACCTCGGCTTTCCGACAACGCGTCTGAAGAAGGGGAGGTCAAGGATGATGGCACTGAGAAGGCTCCCacaaagaagaaacagaagaagaaggataataaagaaaacaaagagaaacaggGAACCcctaagaaagaaaaagatggagacaaagacaaaaagCGTTCAaagccaaaaaaagaaaagACCAAATCAGGAGTGAAAGGGAAGAAGTCCCAGGGGCCTGTGCATATCACTGCGGGCAGCGAGCCGGTGCCCATCGGAGACGAAGACGACGAACTGGACCAGGAGACTTTCAGTGTTTGTAAGGAGAGGATGCGGCCGGTGAAGAAGGCGCTGAAGCAGCTGGACAAGCCCGATGAGGGCCTGTCCGTCCAGGAGCAGCTGCAACACACGCGTACTTGCCTGCTGAAAATCGGAGACCGAATCACAGAATGCCTTAAAGCCTACAGCGACCCGGATCATGTGAAGACATGGAGGCGaaacCTCTGGATTTTTGTGTCAAAGTTTACTGAGTTTGATGCCAGGAAGCTTCATAAGCTGTACAAAATGGCACAAAAGAAGCGATCGCAGGAGGAAGAGAAGGAACATAAAAAGAAGGACGACTCCTCAAGCAGTAAAAAGCCATTCCGGCCGGAGCCCTCTGAACGAGGAGACTGGCAAAGAGACCGCAAATACGGTTACCCGGGAAACAGCAATCAGTCGTGGTCAGGCGATCGGCACCACCCATACGACCAGCATCGCTATAAGGATCACCATTACGGGGATCGGAGACCTCACAGCGACCCCTACAGGAGCTCCAGCAACTACCGCATGGGCGGCTCCCCCCGGAAGCGGCCGTATGACCAGTATGGCAATGACCGTGACCACCGCGGCCACAGGGAATACTACGACAGgCATCAAGACCCGAAGCGAAGGCGCTCAGATGAATTTCGCTCTCAGAACTACCACCAAGGTGGCAGCCAGGACTTCAGACGGATGCCTGAACACAGAGCTCAGGGCAACCACGGCCCGGGGGGGCCAGAACACTATCGCCCTTTCCACACTGACAAACCAGCGGACTACAAACCGCCTCCTGCCTTGCTGGACCCCCGATCCCCACCGTCCCAGAAATCCCCACATGACTCTCGGTCTCCACAAGAAAGGACTGGAGAACAGAAAGGAACCCCTGACTTCAACTGGAACGCCAGAAAAACATAGACGTCGGTGGCTAAACTCGCAACCAGTAAGGATTGAGGATACTGGAGAAGAGATCAATGCTGCTAAATACCAGTCATGGCTTGACTTTGAATTAGACTCTTCTTTGCTTTGAAGTTGCCAGTTTTTAATCTGGTGACCCagaaagagagaagaagagagcGAAAAGACAAAGCTCTATTTACCAGCGGACTAATCCTCTCCGTTTTGTATTGACTTTTTCACATACCTGTGGCTGTGGTTATGTGATGGGCACAGATGGAAGTCTAAAAATGGTTTATATACCCTGTGCTTGAATTCAACTGGAAAGATCATTATGCTAGAGAGCAGatcataaaaaaagaacatgataAACATAACGATCTTTCTATGTGTTTGCTATGAACAAGAAGGATGTCAATGTGGTGAGTCCTGTGGACTGTTGTGTTGGGAGTTGGTTTTGCCTTTATTACTGGGCCAGGGTCAGAATGTGAAAGTGCCTCAAAACGCGTggcttttgattttgaaagtaTTCAATTGGATGTCACTGATGTATTTCCTAAgttgttattttgttcatatgtagattttttttttctctgtcaaaTCTATTGTCTTGATTTTTGGGGTTGGAGGCACCAAAGAACGGTTCATTATGGGGACAAATGTTTATCCAGCCTGCTAGTGTAAGTCTCTATCAATGAGGTCAGATGAATgtgaatggaaaacatttgtctCTTTACAGTttgatttgatatatatataaaaaaattacacacagaTTGATAAGATAtattataatttgattttaaaggcagatgcaatgtttttgttttgtttataattctCAAATACTCTTTTAATATTTGCACCTTATTTATATTCTAGTGGAAAAAAGGTGAAAAGATGAAACCGTTTGTCAGATGCACTGCCTATCCTTTTTCAGAGAGCAAAtatctttattttctccttttaatTATCCAGATAACTTTGAATATTTCGATAAAAGTGACACTCGTCATTGCTGCGCTCAGatttatgaaatgcattgaCCGCACTTTCCTGTCATTAAGCTATAGTTTATTTGTCTAATCAGTTACTAATCTTAATTAAGCCATCCATGAAGCTGAATGCTAATGTCAACCTTGACATGCAGGTACTACCCAGTATTTGAGGTTGTCACAGACCTCACTAGGAAGTTTAAAGACACTAGAATTCTATCTcaagataatgtatttttagccCAGTTAAAAGcctatattttttctttccaaaaaatatttttcactggcaatgtgtgtgtgtgtaatatatatatacatatatacatatacacacaaacacacacacacttcattgCCAAATTGAATGGGATAAGCCTCCCTCCACTGGTATGGGACCGTGCCAGAGGCTGTGTGCTAAATAAAGCTTGGTTTAATGTTAAGGGTTTCATGAAGGCCAGTCAAGGGACCTGATTGAAGCCCGTTCTGCAGTTGGGAGTGAGGCACAGTGGTTCTAGACCAATAGAGCTGAAACCCATTTCACTGCCTGCTCAGTTCTGGCCTCACTCCAGGTGCACAGCTTTGGGATGGACTTGAATTGCAAACCAGAGACCACAGACACAGTCTTCTCTCGCTGCACTAAACAATGGTGCTGCAGAAGGAATTACACAGTATTCCTCCAGCAATCTCTGCAAAGGATTCTAGAAGTAATTAAGGCCAAGGATGGGtattaaaaacattctgaatAGCAGCCTCTTCTGTGTTGCCCCAATACATTTGGTAATCTagtgtatgcatatgtatttgtatgtatacatgtatatgcatATCCATCTGTCTATACACAgaaccacaaacacacatataggctatatatatacatatatatatgtgcgtgtgtgtgtgtatgtatgtgtctgtatacacacaaaaaaaacactactttaaaactgctgttctaaatgtatttattcttaaatcATATTTTCTGGTGTTTGAAAGATGAGCTGTTGCAACATCTTTTAATACCATCGTCGAAACAAAAAGCTAACAATATGAATGTGGTACTTTTTAAAGCTCCTCTTGCACTGAAAGTACAGTATTTCAGttacaggaaatgtgtaacattAGTTGTAAATTCCTTTATTCTGAGTATTTCTGTAGCAACAGGTAAATGATTATTGGAAGGAAAACGTGTCCTTGTTGTGggatatatagatatttaatacatgttcttttttttttaatctatagaTCTTTGAGAAGGCCGTTTCTTTTGTACTCCAATGATTTTTCAGTGCAAGGGAAAACAACCTTGATGGAATTCAAAATGGGATAAATAGACCTTTTTCAACGTGATTGAAATGGCTGTTGCtaatcttaaatacatttcagtgccATATGACATGCAGTCTTGACCAGGTTAAGTGTTAAATGTTCGAAGTTGTAGTGTGCTTTTCCAGCTGTGCCTTATATCCTTGTGATATATTGTCGTCAATGTGTGTTTGAATATTGATATTGTCACAATACGGAATTAATGCAGTATTAATTGATAGGACAGCAACTTACTATGTATGGATTGTGTGAGGGGCATGGAATGGACTGCAAAATCTGGTACGTGTCGCCCAGTTTCTACAGGTCCCAAAGATTCAGCCCAGTGTTGATCATGAATTTTAGAGGCTGGCTTTCCCACACCTCGCCTGGAATAAAACCATGCAGCTGCACAGAAGAAACGGCATACTACACCTCAgcagaaagacacagacacttCTATTGTTACAAGAGGTGAAGACGAGTCATTGCCAACAGCCCCTTCTTtctcatttgcttttttttttttctccaggatTACACCGATGTgtagtcttaaaaaaaataagaaaataaaagaactttgaagaaaaaataatttatatttgtgaaaAAGCCACTGTTAAGTGAGTTTTGctgtaaatatgttgtttatagtcctatatgtattaaattttTCCTACATTGTAAACCATTGTCCTCTGAGGATTTATTAAAGAGAGTTCT

Function

symbol description
chd2 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Acts upstream of or within chordate embryonic development and locomotion. Predicted to be located in nucleus. Used to study childhood onset epileptic encephalopathy. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human CHD2 (chromodomain helicase DNA binding protein 2).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform X1

GO: NA

KEGG:

id description
K20091 CHD2; chromodomain-helicase-DNA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007874 True 8496 mRNA 0.45 37 35556250 35594137

Neighbor

gene id symbol gene type direction distance location
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding downstream 751372 34796895 ~ 34804878 (-)
AMCG00007861 NA coding downstream 1513354 34011110 ~ 34042896 (-)
AMCG00007862 NA coding downstream 1556512 33995712 ~ 33999738 (-)
AMCG00007859 NA coding downstream 1618170 33922475 ~ 33938080 (-)
AMCG00007856 NA coding downstream 1742317 33800570 ~ 33813933 (-)
AMCG00007875 NA coding upstream 31673 35625810 ~ 35637920 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding upstream 55707 35649844 ~ 35665471 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding upstream 123887 35718024 ~ 35735817 (-)
AMCG00007880 NA coding upstream 246016 35840153 ~ 35852765 (-)
AMCG00007879 NA coding upstream 261751 35855888 ~ 35859285 (-)
G26997 NA non-coding downstream 3743 35550871 ~ 35552507 (-)
G26995 NA non-coding downstream 18614 35537304 ~ 35537636 (-)
G26994 NA non-coding downstream 24812 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 739330 34816694 ~ 34816920 (-)
G26943 NA non-coding downstream 759397 34796169 ~ 34796853 (-)
G27023 NA non-coding upstream 1293 35595430 ~ 35603175 (-)
G27107 NA non-coding upstream 432586 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 435332 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 508169 36102306 ~ 36149276 (-)
G27173 NA non-coding upstream 768334 36362471 ~ 36364455 (-)
G26961 LOC101154678 other downstream 686443 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 3740099 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4213458 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4309601 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6542303 29001049 ~ 29013947 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 409056 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 1248338 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1645947 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1900774 37494911 ~ 37499392 (-)
G27437 NA other upstream 1973480 37567617 ~ 37569284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_01443540_01469011 CHD2 coding CI01000013 null 1443540 ~ 1469076 (+)