AMCG00007875


Basic Information

Item Value
gene id AMCG00007875
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35625810 ~ 35637920 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007875
ATGACTTTTGAATCCCGGTGCTTTCTGTTCGCCGTGGTCACGGTACTCGTGGTCTTCCTCATTTTGGCCGATATCTCTGAAGTGGAGGACGAGGTCGGAAATGCTGCTGCCCAGACAGACACCACGTCAAGATCCTTGGTTGGGAACATCAAAAGAAGAATCCATAACAGTAGTAGGACGATATCTCCTTCCGAATGGAGGTTCAACTCTAGCCTTTCTCGCTCCATCAGaaaaaatatcCTAAAGTTTCTGGATGCTGAAAAGGACATATCagtgctgaaaggaaatctgaaGCCTGGAGATACGATCCATTATATATTTGATCGTGACAGCACTATGAATATCTCAGAAACCCTTTACCAGCTGATTCCTAAAGTGTCCCCTATGAAACAGCAACACTACAGGAAATGTGCTATTGTGGGCAATTCTGGAATTTTACTGAACAGCAGATGTGGAGAAGAGATTGACTCCCATGACTTTGTCATCAGGTGTAACCTGGCGCCCGTGGAGGAGTATGCTGACGATGTTGGCCTGCGCACCAGTCTGGTTACCATGAACCCTTCAGTGGTCCAACGTGCCTTCCAGGACTTGGTGAGCGAGAGCTGGAGGGAGCGTTTCCTCCAACGCCTGCGGAGCCTCAACGGTAGTGTGCTGTGGATCCCCGCCTTCATGGCCAAGGGCGGCGAGGAGCGCGTGGAGTGGGCCAACGACCTCATCCTGAAACACCACATCAACGTGCGCACTGCCTTCCCCTCGCTCAGGCTGCTGCATGCTGTCAGAGGGTACTGGCTGACAAACAAGGTTCCCATAAAACGTCCGACCACCGGGATGTTGATGTACACCTTGGCCACGCGCTTCTGCGAGGAAATCCACCTCTACGGCTTCTGGCCTTTCTCCCGAGGCCCGGCCGGAAACCCGGTGAAGTACCACTACTACGACAGCCTAACGTACGAGTACACGGCCCAGTCCAGCCCTCACACCATGCCTCTGGAGTTCAAAACCCTAAAGAACCTGCACAGCCAGGGAGCTCTGCAACTGCACACTGGACCCTGTAACACGAGAACGTAA

Function

GO:

id name namespace
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K06612 SIAT8B; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007875 True 1068 mRNA 0.52 5 35625810 35637920

Neighbor

gene id symbol gene type direction distance location
AMCG00007874 chd2,LOC107715217,LOC107690375 coding downstream 31673 35556250 ~ 35594137 (-)
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding downstream 820932 34796895 ~ 34804878 (-)
AMCG00007861 NA coding downstream 1582914 34011110 ~ 34042896 (-)
AMCG00007862 NA coding downstream 1626072 33995712 ~ 33999738 (-)
AMCG00007859 NA coding downstream 1687730 33922475 ~ 33938080 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding upstream 11924 35649844 ~ 35665471 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding upstream 80104 35718024 ~ 35735817 (-)
AMCG00007880 NA coding upstream 202233 35840153 ~ 35852765 (-)
AMCG00007879 NA coding upstream 217968 35855888 ~ 35859285 (-)
AMCG00007882 NA coding upstream 293322 35931242 ~ 35941429 (-)
G27023 NA non-coding downstream 22635 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 73303 35550871 ~ 35552507 (-)
G26995 NA non-coding downstream 88174 35537304 ~ 35537636 (-)
G26994 NA non-coding downstream 94372 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 808890 34816694 ~ 34816920 (-)
G27107 NA non-coding upstream 388803 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 391549 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 464386 36102306 ~ 36149276 (-)
G27173 NA non-coding upstream 724551 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 830166 36468086 ~ 36468452 (-)
G26961 LOC101154678 other downstream 756003 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 3809659 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4283018 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4379161 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6611863 29001049 ~ 29013947 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 365273 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 1204555 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1602164 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1856991 37494911 ~ 37499392 (-)
G27437 NA other upstream 1929697 37567617 ~ 37569284 (-)

Expression


Co-expression Network