AMCG00007876 (LOC107601651,LOC107690372,LOC103369184)


Basic Information

Item Value
gene id AMCG00007876
gene name LOC107601651,LOC107690372,LOC103369184
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35649844 ~ 35665471 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007876
tgtttacaggtATCTTATTCTCAACCCTGGTGTTTGGCCCAGCCTGTGGGTTCATTCTGGGGTCTCTCTGTACCAAAATCTATGTGGATGCTGTCTTCATCGACACCAGTAAGCTGGACATCACCCCCGATGACCCTCGCTGGATCGGAGCCTGGTGGGCCGGCTTCCTGCTGTGCGGTGCCTTACTCTTCTTCTCGGCCCTCTTCATGTTCGGCTTCCCGCAGTCGCTGACGTGCCAGGAGGTGGAGAGCGGCGCCGAGAGTGAGCAGACCATGCTGCCCGAGAGTCTGCCCCGCGACTACGAGAGAGCCAAGCCCAGCAACGGAGTCCTGCGTCACCCCCCGGAGCCGGACGCCGGCCCGTCGTGCTGCCAGCAGCTGCGAGTGATTCCCAAGGTGACGAAGCACCTGCTCTCCAACCCTGTGTTCACCTGTATCATTCTGGCCGCCTGCATGGAGATTGCAGTTGTCGCTGGTTTCGCTGCCTTTCTGGGGAAGTACCTCGAGCAGCAGTTCAACCTCACCACTTCGTCAGCCAATCAGCTACTCGGCATGACAGCCATCCCCTGTGCCTGTCTGGGGATCTTCCTGGGTGGACTGCTGGTGAAGAAACTCAACCTGTCTGCTCTGGGAGCCATCCGAATGGCCATGCTGGTCAACCTGGTCTCCACCGCCTGCTACgtctccttcctcttcctggGCTGTGACACCGGGCCTGTGGCCGGGGTGACCGTGGCCTATGGCAATGAGTCGTCCCAGTCTGGGCTGAGGCCAGTGGCCGCCTGCAATGCGCACTGCAACTGCCTCACAGATTCAATCAGCCCTGTTTGTGGCTCCAATGGCGTGACGTATCTGTCTGCCTGTTTTGCTGGCTGTTCCAGATCGAACCTCACAGGGTGCGCCTGCATCTCTGCAGACCGGGCGGAAAATGCTACGGCTGTCCCTGGCAAGTGTCCCAGCCCTGGGTGCCAAGAGGCCTTTCTGACCTTCTTGTGCGTGATCTGTGCCTGCAGTATGATTGGTGCCATGGCACAGACCCCCTCTGTCATCATCCTTATCAGGACCGTGAGTCCCGAGTTGAAATCCTACGCATTGGGggtcctcttcctcctgctgcgACTTCTAGGTTTCATCCCACCTCCACTGATTTTTGGTGCTGGGATTGATTCCACCTGCCTGTTCTGGAGCACCGTCTGCGGGGAGCAGGGCGCCTGTCTCCTGTACGACAATGTGGCCTACAGGTATCTGTACGTCAGCATCGCCATCGCTCTCAAGTCCGTGGCTTTTATCCTCTATACCACCACCTGGCAATGCTTacggaaaaactacaaaagatACATAAAGAATACTGAGGGCGGCCTGACCACCAGCGAACTGTTTGCCTCCACCCTCACCCTAGACAACCTGGGCAAGGAGATCAGTCAAAATCCAGCCAGCAGGACAAAGTTTATATACAACCTCGAAGACCACGAGTGGTGCGAGAATATGGAGTCTGTTTTATAGCTTTGACTTTAATCAGAgttcacaacaaaataaaccaatacaaataaaaatataacatagAACAGAAGAACGTGACACTATATACCAGTCTCTTGAAGGatatcctttctttttttgtctgaaaaaagaaaagacaaaatatttaaaaattcagTTCATGCATTTTAAGTCCTGTTCAGGCCCTGGAAGACTGTTGCTGCTGTCTGCTCCAAATCCACGTTTGACTCGTTAAGGGTCCATTTTTAGATCTGATTTCTGCAAGGATGTCATCCAATACGGTGGCTTTTAGCAACCAACTGCTCTGAGTTTCCACCCTTTACCAAGTACTGGCTGGTTTCCTCCTGATTTTAAGTGGTAACTTAAATGATTCTATGTCAGCTTGATCGGGATCTGAACCCAGTCTCTTTAAGTAAAGGAACCTCTTTTTCTCCATTATTTGAACTTATATATCTCCAAATCTccaaaaagtgtaattttttatttattttttattcgcTATTATTTATCCTACTTGCGGATAGCTGTTTACAACACAGGAGTTCTGTCATGGaaaaatactatataaatgTCACAGTCAAGTCTAGTGTTAGTGACTGAAGACCTAGGGCACCGATTATATCAGCATAGATTTGCACATTAAAAGAATGTGTCCTCAAAGGTTGGTATATTATCCAGCATTGTTGACATTAAACatcaacaattttttttattcattaaaatgaacaacttTCATTAAACATCTGGACAAATTGTtcacttttctttcattaaatattgCTTACATTTGTACGTCATTTCTATTACTATATTAAAAGCTTCACTAAATGCAGTAATCTGGTATTTTTGGTTTGACCGCTGAAAGCCTTTGGATTTTCAGAACGTTTTTAGAGAGGGTGCCCGAGAGCTAAGGAAAAGggattgtttgtatttatttcattttaagctGTTACTTTCATTAAGCCATTGAGATTTTTCAAAAACCCAGACAAGAGAACAAAATCCAGGTTTCTGGTACTGGAGTCATAGTTCGCCGTGAATGTATACACCACTGTGAGGAAAGGAACTGAAggaactgaatacatttttttatgtagagTAGTTCTGCATGTAACATTTAATAACTCATTGATCTTcttttatttatcagtttgaCTCTAGTTTTATTACTCAGATCTAGTTCTTTATATTGATTGTGATGAGTAGAGGAACCACTGTTTCCatcaggaaaagaaaatagCAGAAACATTGGAAAACAAAGGAGTGTCTTTATAAAGTGTACACCAAATAGGGGCAATTAAGACGTTAATGCCATTTGTTATGCACCACATTGAATAGCAGGCTACTACTGAAATATGTTTCATTGAGATATCCCAAGAAACCTTTAATCTGTCACTCACGTATTCTGCATCTCAGAAGGTCTAGGATTCTGTGTTCTTGTGTGCCATTTCACATTCTGAAGCAAAGTTCTAGATGATTTATAAAGATGTATTTGCACATTTCATTCAGAGCTGTTCACACTTAATtccagccttcagtgcccctcAGGTCATTGCTATCTTTTccttctgtaataataataatgtttagcattcatgtattctgttttttttttttatatctcaTTCAGGTGCATTGTCCATGTCATTGTCTATGAACCgtttttgtcatttgtcaaaCTGCTTCTTCTACTTCTTTGGTTATTACAAAAGCAGAGGTCTTTGTCTCTGAGTATCTTTTGTGGGAAGAAGAAGGCTTGCAGTCggtgaaatgtatgtatgatgCATCCCAAACTGAGCTTCAGAATGTGAGGAAGTGCACAAGAGCTAATACATCTTCTAAAACAGCACATACATCAGTGATAGTAaagtttctaaaaaaaaaagtgtccatCAGAATTTTTAGGCTTGATAATCCATATAGcactttcttatttattaacagTGCATATATACAAGACAACAAACAGGTCAATAGTCTATTGATAGTATCACCGTGTTCCCTCTCATATTTTTACTCTTACAAATTGGTTGTCATTCTTTTATTcagccattttttattAGCTACTCTCGGCTGTAGTCAGCAAGTTAAACTAACAGAAGTTTTCTGCTGctacagaacaaaaacagatattACATCAAATTCACCAGTTTCTTAGTTCTTCATCCAGTCAACCTTCTAGTTAACAATGGTGTatcaaatagaaacaaacaccaaaagTAATGAACACCAAATCTGTCTTGTTGACAGACAATGAACCCTTCATCATTGATTTGCCTTTGCTTCATTTTTTGGGGCAGTTATCTGTTATTAACAGTGACTTGAAGGTGGCATCTTATCACTCCAAAATAGGTGGTGGGAATTGAATGGGGGGTGGTGTGGATTTGTGATTGAATCTGAGACGGCCCCCCATTTACAAAGCAGTTAAACAGATTCCCATCTGGAAGTGAGATTACACCCAAGGTGAAAAAAGCAAGAAATAGATGCAGGATGTGGATAACTAGGAATGCCACCCGAAGACCCATATTATATCTTTCATATAATCAATCTGCTTTTAACAGGCTGTTTTATATACAGCCAACATTTCTGCAAGTAACTGGTTCTGCCGAGCCTGATTTTTCTGCTTCATAAATTGGCAGCAGCCTGGAATGACATTGCATGCTTGATGAAATGTAATAGTGCCATTGCTAACATACTGTTTTCATCTTAAAGCAGCTTACAGGCCCCTTTAGGggttgataatatatatatattttatattagaaTGGTCATGGACTTTGTGATCACTTGAAAACCAGCTCATACTCCATTATGGATCACTTGTCGTTTTCAAGGTTTTAGTGAAGATGCCACATTTTGTAAACCCACCAAAAGTCACAACATAATCTCAAGAGGTGTGTTTGTCATGTCGTAAAGGCTTACACTGTGAGTTTTCAATACCTCCAAACTTTTTCTAAAGCATTCCTACATCAGCACACCCCTACTATATAAAATAGACCGTTTTAGTATTTAGCAATAGGGCGTATTACAAGGCATCAAACGAACAGTCCACCTGTCAGAAAGTTTTAGTCCTATTATATTGGAACTGTGCTGTTTTCAAAACTGGCAAATCATTGTATCCACAgccatttgaaaatatttaagagTAACTGTGTTAACTAGAGCTGCTTGAGGTGTTCTTGAGTAAGATCTGTAATATGAGCAAATATGATGTTTTTAGGGAATTTTATAGTACTGGGCAATTCCCCCCAGATTAAGTTAGTTATCTGAAATTACTTGGGCTGTGCACTTTCTTTGCTCAACTCTAAACCCACCTGCCTTTAAAACTATAATTCCTTCATTCATGGTGTTGATTAGTTAACAGTAAAATAAGCTCTCTTTCTTTGCTGGAAAACTCTTCATAAACAGGGAAGTGTATTGCTTTAAACTCGGAGCGTTCAGAGGAGGGTCCTACCTCACGCTGCTGActtgaaactatttaaaaaccCTGATCAAATGCCAAATAAACTATGCCAACAATCAACTATGAGGGGAATGCAGGAATGACAGTTTCACTTACAATCAGGATAGAGCTAATTACTTGTGAGATTCTCTGTGCATCATTCACTGCAGTATAGAGTGGAGGACTCTTTCCACTCGATGAGTGTATTTCAATTTACAGTTAACAGGCTTGTTTTCAGGTTGaatgaaaacatacagaaagagTGAAAGAATGAAAGACGTCAACTCTAATCATTTTTAAAGGCAGGTGGGGGCAAAATGCAGGGTCCTTGTTTTGACAGCGAAAGCCTGTAACtggtttcttttgttctttaaacTATAATAATGACAAACCCTTTCTGTATTTTGGGAGTCTGCATGGCCTAGTTCAATTACCTAATGTAGCCTGTGACAAGGTATGCCTTTATAACTAACGTTGAAATGCCATTCATGCAAACATCGTAGAGGAGAAATGCAGTCCAAAAAAGATAGTCATTATAATTGCCAAAATAATCGGTTTTGTCTGCTTTTCTTGCTGCAGTTGTTTGTGTGAGGTTGTGCTAGGAAACATCTGATAATATCCTGGTGACAGATACAGGAAAGCCACCTTCACTGCCAGCCCCCATACTGCACTCCCTACACTTGGACACTCTTACGCAGTCTCTGATGGACTGTCTAACTGACAGAGAACTTCAGACCTATTGGCCACAACTGCATGCAGCCGGCCTCATGGGAAGAGAAACCGTTGCCAAACTCAATTCATAAAGCCTGCCAAGAAAAAACTATCTTCACTTCATCCATGAAGCCAGCGTTATGCATTTGTCTTTTGGTTGTGGTCTAACACAGAGATCAGAGATCCCACAGGTTACATTGATGTGCCCTTCGTGTTGGTGCATTGCCTAAGCTATGGCCAGAGACACCCTTCACATGACAGGTGTTGCTGTGTCTGAAGGGTGTGAATGCAGCATTATAGATTAACCTGACTCATACATGCACATATAAGTATTCATGGCTTTTTGGTGCTTTCATGTATCTGTGTCCAAGAGGTGACGTTTGTTCAGAGGAAACAATTTGCCAAATGACTTAACATTCCAGATGAGTTTGAACTGAAATGCCTTGAAGGTAGCCCTGTGTTAAAGACTTGCAAATAAATAGTATTCACCTTTTAAAGATGATTTATATTCATGGATATGCAAACACTGGGGAATTTTGAATTCAAATTACCAAGTGTCCAAAAATAAAAGGATGTACAAACCTTTGATTCTGGAAAATGACATGTTTAGCAACCAAAATGTTTCGTGTTTTTCAAAACCAAATGCGTTATGTTTTTAAGCAAAggactttttatgtatttaatttattaatgagtTCCAAATTTGAATGCCAGCCATGTATTACAGCATCAAACTTAAAGATACTAAGGTCAATTGgacaaataagaaatacattgtaGATGTATCCCCTTACTTTCAATCACTTACCAGttttataaagaatatataaGTTGCAAAAACTTTCTAAATATTTGATGGCAAAAATATATgcttaaagataaaaaaaaaacatactcgGATGCTGAGGATCCATTGCAAAACATTCACCCTTTATGAACCTATTCGGTATATCCACTGAATAGGGTTGGCTGTCAGAGCTAGCAGTACAGCCCTCTTAGAAAACTTTAGGAAGAGCCAGCATGTGCTTTGCTCTGGTCAAAGGTAGTTCTGTAGTTGTTCAGGGAACTATGGACAAAAGGCAATAAAATCTCTGTTACGGTGAACTGATTTTATAGTGAACTGATGATTGCGCCATTAAACTTGGCCACATttattgtgtgtgcatgtgtgggtttgtttttagtttaattttaatgtcccagcttcctttttcttttcttttcttttcaccaGCAAAAAACGGTGGGGTCCTGGGATTGAGATAGGAAAAGCAGTGctaattaacaatttaaaaagtaactgGCAGTGGCTATACGCCTCAACTGTGCATGCCAGAGTCCTGTAAAATGATGTTCAAGGAGCATTCTTGTTAAGCATTGCCCATGAAGGGGGGCTTGTCTGGACATGGTCTGCATGTTTAATTCTATACACCATTGACTTTGTACCACTGGAATGTTTTGTAGGttataaaccattttattttgcattcctGAAGATCAAGCAAGGCCAGGCTCAATGGAACCTAAATCCATTTGCTCCCCATGCTCCCATTATTCCCTgagtttaaagaaatatatatagcatGTATTGTAGGCAAGGAGCCTAATTATGTCTCATTAGTAGCATTGTGTgaacagggggtgggggttattAATATAGCAGCCTGCTTTCATGACAGTACTGCAAAATGATGTTTTGGTTCTATTGAACTATTTAAATTTCATTCCAAGGGtaaacacagaacacagcccttttttggcttttttatttattcttccatTCAAGGCTCAGTCAGCAACTCTTAACCCCAGTCTGGGCATGTGCCCCGCCTGCGGTCCAATCAGCTTAATTTGCTGATGCTCTCGATGATCTCTTTCTTTAAATCTTGATTGCTCTCTTCTTTTGTATCGTGTTTTCAGATGgtttttttattatgtgtttCTGTCATGCCATACAAGTGCCAAAATTAcatgaacatgttttttctacTTCActgaggattttatttttactcattTGATTTTACCTGGGTCTGAGGAAGACGAAAAGGGACTGTATTCTCAGTTAGTACAGCAGGGATCCTCCACTTGACACTTTGTAATGTGCCCAAACTATTGTAGGAATTCCGTTAaggttttttaattgaagtttttttgttttgttttaggtttcttttttgtaaagaaaactTATCAATACAATGGTTTAcctatttaatttat

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 3A1-like

GO: NA

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007876 True 7875 mRNA 0.41 9 35649844 35665471

Neighbor

gene id symbol gene type direction distance location
AMCG00007875 NA coding downstream 11924 35625810 ~ 35637920 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding downstream 55707 35556250 ~ 35594137 (-)
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding downstream 844966 34796895 ~ 34804878 (-)
AMCG00007861 NA coding downstream 1606948 34011110 ~ 34042896 (-)
AMCG00007862 NA coding downstream 1650106 33995712 ~ 33999738 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding upstream 52553 35718024 ~ 35735817 (-)
AMCG00007880 NA coding upstream 174682 35840153 ~ 35852765 (-)
AMCG00007879 NA coding upstream 190417 35855888 ~ 35859285 (-)
AMCG00007882 NA coding upstream 265771 35931242 ~ 35941429 (-)
AMCG00007886 NA coding upstream 372975 36038446 ~ 36060653 (-)
G27023 NA non-coding downstream 46669 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 97337 35550871 ~ 35552507 (-)
G26995 NA non-coding downstream 112208 35537304 ~ 35537636 (-)
G26994 NA non-coding downstream 118406 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 832924 34816694 ~ 34816920 (-)
G27107 NA non-coding upstream 361252 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 363998 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 436835 36102306 ~ 36149276 (-)
G27173 NA non-coding upstream 697000 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 802615 36468086 ~ 36468452 (-)
G26961 LOC101154678 other downstream 780037 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 3833693 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4307052 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4403195 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6635897 29001049 ~ 29013947 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 337722 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 1177004 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1574613 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1829440 37494911 ~ 37499392 (-)
G27437 NA other upstream 1902146 37567617 ~ 37569284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013443 slco3a1 coding NC_007129.7 CM002902.2 25073984 ~ 25177230 (-)