AMCG00007878 (si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031)


Basic Information

Item Value
gene id AMCG00007878
gene name si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35811726 ~ 35815067 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007878
CGCGCAGCTCGGAGGCGCCGCTCAGTGACTCAGTGACTGCAGGTGCGCACCGTCCTGCTCTGACTGCTTCAGCCAATGGTCCGAAGTCCCTGCAAAGCAAGACTTTCAGCAGAAATGACAGGACTCAGTGCTTTAAAGATGGATGCAAACGTAGTGGTTTTAGGAACAGATAATGTGGGCAAATCTgctCTCACGGTGCGATTCCTGACTCGGAGATTCATCGGGGAATATGGAGATATAGAATCAATTTACAGTCACAACTTTATTGTAGACGGCAGGGAAATTTCCTTCAACATCTGGGACTCTCCTTATTCACAGGACCCATCCTGCGAGACTACCACGTGTGAGAAAAGACTGCAGTGGGCCGACGGCTTTGTCCTGGTGTACAGCATCTGCGACCGAGCCAGTTTTAACAGCATCTCCAAGCAGATCCAGTCCATCAAGGCGGTGAAGGACTACCTGGGCGCTGAGAAGGTTCCCATCGTGATCGTGGGCAACAAGAGGGACTTGCACCACCGCAGGACAGTCTCCAGCGAGGAGGGCCGCCTGTTGGCCCTGTCCACGGACTGCGCCTTCTATGAGGTGTCTGCTGCCGAAAACTACCACAGTGTGCTTCTGGTCTTCCACGGGCTCATTGAGAGGATCCGGGAGTCAAAGACGGCGGTGAAGAAACCGGCCGGGATCAAAAGCATCGTGAAGAGCATGTCTGCCGTGTTCACCAGACGAAGGACAGACTCTCTGTGAGAGAGGATGCGGCGGTGCCAGGATACATAAACGCCCTACAGGGTTACTCCTTCTGCCTTTGGTAACGAGGCTCTTTGGCTGTAAACGAGCCCAGTTTGATGGGGTGTCATGCGTGTGATCCGTGTGCCCAAGGTTTATGAAAGCACTGTCCTGTGTTCATTGGAACTGGACGCAAGAGTGAAGAAAGAGGGAACCCGAGCAGAGATTGCATCTTTTCAGAAAGTGCTTCTCATTGATGCAAGAATCTGTAAATTATGTCTTTCTCGTAATGGTGTGGAAAGATAATCTATAAAGCACCTGTAAGTGGGAGTGCAAAGGAGCATGGGAACTATCCTGTTATCTGCAGCATATGTACTGAGATTCCTTATGTGCCGCGGCCCAGGCTGTCGCATGGGGATAGGGTGAGTGTGAGATAGGGAGCCAGTGATTGAGAAATTGCAATCCTGCCAGCTCTTTGTTAAGAGAGCAAAACTTGAGTTGTACTGAATGATGCGGGGGAAAAACATGCAGTGCAACAAAGACTGAAGTCAGCAGTGATTTGGCTCCGATAATGCAGAATAAAATCCCCCAATAAAACATCAGAAAACCCACCACcatttttaacataattacTGAAAGCCCTCACTAAAATCTTAAAGCACTCAATATTTTACTGTGAGCTCCAGCACTTTGCATCGGCCTGCCTCTCTTCTCTATCTCTATCTTTTGAGATATTGTTCACATGGGTGCTTGTTTTTATCCTGCATTGACAGATTTAGCCTGGTTATAGGCccgtttttcattgtttattctCATCTGCCAGAATGGCACACATCTCATTATTTTTGTCACCGCCGACTGCTCTTAGGAAGTCAAGGGTTCACTAGTTGCTGTGTATGGTTTCCTGAAACATCTAGTCTATGTCTCTGAAACGAACGCCAGTTCCAGTGTCCAAAGCCCCAAACCAAAGGATCTCGCATAATATTAAATTCTTTGGAAACCCTGCATAGCAagccaattattttattataatggtTTGGTTTGTAAATTATAAACTACATTAAAACCTAAAAGCAATACTTAAGTCTTTTAGGGGGAGGGCAACTCACTAGAACATATCactcatgttttcttttcagtcttctctaaaatgaaacaattgaGCACTTTCTACAACTTAATACTTTAGACGGATGAATAATTCTGTGAGCTGAATGTGAAGTAGGGCAATATGTGATGTGCAGCTTCACACTATTGTGTAAAGAAAAATCTTTGAATGTATAATGTGatgtaaatatgtacatgtgattatttaaaaaaaacttttgcaaaaaaaaacattttattttgtacaaatgttcagctatgaaattaataaatatattaagcgATAATTATATGAAA

Function

symbol description
si:dkeyp-59c12.1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to human RERGL (RERG like).

NR:

description
PREDICTED: ras-related and estrogen-regulated growth inhibitor-like protein

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007878 True 2127 mRNA 0.45 4 35811726 35815067

Neighbor

gene id symbol gene type direction distance location
AMCG00007872 LOC106561144,LOC106573775 coding upstream 262819 35537561 ~ 35548907 (+)
AMCG00007871 NA coding upstream 487836 35320619 ~ 35323890 (+)
AMCG00007870 NA coding upstream 583002 35222464 ~ 35228724 (+)
AMCG00007867 NA coding upstream 1458092 34348487 ~ 34353634 (+)
AMCG00007868 NA coding upstream 1486310 34271763 ~ 34325416 (+)
AMCG00007881 NA coding downstream 45564 35860631 ~ 35931488 (+)
AMCG00007884 NA coding downstream 202620 36017687 ~ 36019684 (+)
AMCG00007888 NA coding downstream 469916 36284983 ~ 36294189 (+)
AMCG00007892 NA coding downstream 589601 36404668 ~ 36425781 (+)
AMCG00007896 NA coding downstream 669919 36484986 ~ 36489446 (+)
G27025 NA non-coding upstream 203089 35608423 ~ 35608637 (+)
G27021 NA non-coding upstream 208544 35595413 ~ 35603182 (+)
G26998 NA non-coding upstream 252167 35556145 ~ 35559559 (+)
G26993 NA non-coding upstream 259223 35550842 ~ 35552503 (+)
G26978 NA non-coding upstream 521481 35290036 ~ 35290245 (+)
G27079 NA non-coding downstream 87977 35903044 ~ 35903259 (+)
G27089 NA non-coding downstream 172234 35987301 ~ 36000934 (+)
G27108 NA non-coding downstream 214391 36029458 ~ 36030333 (+)
G27111 NA non-coding downstream 287229 36102296 ~ 36182722 (+)
G27139 NA non-coding downstream 490907 36305974 ~ 36306877 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 190925 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2016785 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 4371348 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 5992174 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 6086992 29622311 ~ 29724734 (+)
AMCG00007889 NA other downstream 481151 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 1388803 37203870 ~ 37216558 (+)
G27518 NA other downstream 2329917 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 2353503 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 2540862 38355929 ~ 38423155 (+)

Expression


Co-expression Network