AMCG00007879


Basic Information

Item Value
gene id AMCG00007879
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35855888 ~ 35859285 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007879
TATTTGAACgtttaaaatgaattgttttaCGAATAACCCGGGCACACATGTGACATAATTATACCTGCATAGAGTGCTAACGTGACTAAAACGTCATCCTAATAATATAATGCTCTCCGAAATACAATTTCTAATTAGAATTTTAGAACTTTATAATTAGAACGCTCTCAGGTCTCAACcagcaaagtttaaaataaaaacgaaatAGCTGTATTATTCTGTTTCTCTCTAAAAATCATTTTGTTATggcaaacacaaatatatgtatagccTATATAGACCTGGTAATCTGATGACATAAATTACAAATGCGCTGAACCAAGttgttctttctttgtcttaAGTGCGTTTGCATGCCTTTTGTTTCGTcggttgttttttggtttggttgttCTGGAAGACACTGCTAATGAATTCGCTTCCTTTCAGAGCTACACAATATGCATGTGCTTTACTTAAGTATTTGTTGCGAAATAAGGCCGCCAGGAAAGAGCTGGTGAAAAAGATCCACATCTTGGAATCAAACATGAGCGCAGGGAGGAAATTGTTCAGGCTGGGGAACACAGTGAGCGCCATTGATGCCACCAAGCGAACCCTGCACCTCTCGGACCCCATGCTGCGCTTCTGCCTGACCGTGGCCAACCTAAACCGCGCACTCTATTTCATATGCGACAACGCACTGTGGGTGAGAAGCATTGGGCTCCTCCCTGACCTCAACAAGGACCGCTGGAGCTTGCATGCCTCCCGCTATTACTTTGTCTCTTTGGTCATGAACCTGACTCGGGACGTGTACAAAATCTACAACATCATGGAGCGCAGGGCTCGCGACAAGCGCTTCCAGCAGAAAACAAACGAGCACCTCAATGACAACAGAGACGTGGCTTGTGTGCTCGTCCCGAAACTCAATGCTTTCCTGCTGCTGCTTTGCGAGAGCCTCAGGGCCAACCCTGCGGTCCTGCTCGACACTGTGAAGAACCTGTGTGACCTCTTCATCCCGATGGACAAGCTGGGGATATATAGGACCAATGCTGGAGTGGTAGGGTTTTGTGGACTGATGTCCTCTCTTTTAGGAATACTCTCAGTCTTGAAACCCAGCTTGAGAATAAAACCTTAACCTCAGCCAGCGCAGGGGCAGCATGGTAGATGACACTGAGGGGGTATAGCTCAAGCTTATTCCTTAAACTCTAATGACCGCTAAATAATACTAACACTGTGAATGCGTTGATCTTGGTGTGAGGATCTCATTCTGGTAGCGGTTTTTCTAGAGTAGATTAGCACTTGTATACACTGGAAATTTACACTACAGGTGCCAGTGCTGGATGTGGTTTCATTTAAAGGAGATATGTCATTGACTAGAGAACATGACTAAGAAGTAAACCTGCAAATCAAATGTTCTAAAACGGCaacttcaaattatttttttaaacaaaagtatgtgtGACATTATTAAGAGGCCCAATGAAGTAAAGGGACATACTCTCactagtttacatttttttttcataatttaacatCTTAAGCCTGATCTGAAATCATGACAAAAAGAGTAagcttaattttgttttgcttaattgtatttgtttgtattataaataaatgaagggataagttcttcattaatgtattatttggaCATTTGATGACTTTATAAGAGATATGTTGGGACAGAATTTATTTGACTTATGAGGGTTAAGTGGTATATATTGCACAGGTATCATGTCTCTTTAAACAGTAACCTTCAGCAGCACTAATCAGCACTAATTCTACCTCCAATGCACTGGTACAAACAATTGTTACTTACCTTTTTTACTATGCTAGCAGTTCTTTTGACTGCAATCTAGGGTTTCAAATTCAAGTATTTGtaataaaagcagaaataaagtTTTACTCAACCTCTTTCAATGGATGTTAAGTAGGACAGTGGGAGCTAACTTTTGCTTTGTCATGATTATGGCCTTGGTAAGATATGCATTTGGAGAAAAGTGTAACTTTGTAATAAGCTTAGGGGAGATTGTATTGTGTACGTTAGTGATAACAGAGTGCAGGATTTGACTGCAACTTTTCTCATTGGTATTTATTCCAGGATACGTTTTTAGAGGatgtctgtgtatgttttcAGATATCCTTAAGGAATAGGAGTTCCAGTTCCTTTTTTGTGCACTAATATGTAACACATAAGTGGAACATGTATGTACAATGTGGTGCATTGATATTAACTTCAGTTTAataaattgttttctttcaga

Function

GO:

id name namespace
GO:0016559 peroxisome fission biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component

KEGG:

id description
K13351 PEX11A; peroxin-11A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007879 True 2246 mRNA 0.39 2 35855888 35859285

Neighbor

gene id symbol gene type direction distance location
AMCG00007880 NA coding downstream 3123 35840153 ~ 35852765 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding downstream 120071 35718024 ~ 35735817 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding downstream 190417 35649844 ~ 35665471 (-)
AMCG00007875 NA coding downstream 217968 35625810 ~ 35637920 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding downstream 261751 35556250 ~ 35594137 (-)
AMCG00007882 NA coding upstream 71957 35931242 ~ 35941429 (-)
AMCG00007886 NA coding upstream 179161 36038446 ~ 36060653 (-)
AMCG00007885 NA coding upstream 262985 36122270 ~ 36142643 (-)
AMCG00007887 NA coding upstream 320624 36179909 ~ 36267806 (-)
AMCG00007891 NA coding upstream 445121 36304406 ~ 36306372 (-)
G27023 NA non-coding downstream 252713 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 303381 35550871 ~ 35552507 (-)
G26995 NA non-coding downstream 318252 35537304 ~ 35537636 (-)
G26994 NA non-coding downstream 324450 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 1038968 34816694 ~ 34816920 (-)
G27107 NA non-coding upstream 167438 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 170184 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 243021 36102306 ~ 36149276 (-)
G27173 NA non-coding upstream 503186 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 608801 36468086 ~ 36468452 (-)
G26961 LOC101154678 other downstream 986081 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 4039737 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4513096 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4609239 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6841941 29001049 ~ 29013947 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 143908 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 983190 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1380799 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1635626 37494911 ~ 37499392 (-)
G27437 NA other upstream 1708332 37567617 ~ 37569284 (-)

Expression


Co-expression Network