AMCG00007880


Basic Information

Item Value
gene id AMCG00007880
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35840153 ~ 35852765 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007880
GAGAATGTGTTTGTGCGGCTCCTTGGTCTGCCCGTGGTGAGCAGCACGTACGGGATCATCGAGAAGACCTACACCACCACCAAGCACACTCACCCGCTCATCTGCACAGTATGCGAGGTCTACGAGAAGGGGGCCAAGACTGCCACCAGCCTAGCGTACATTCAAAAGCAACCCAGGGCTGTTGGAGAATCAGTCGTTTGTGGTCAAAGCTGGTCTAAAGTGTCTTTTTCCTTTGTTGCTGTCAACAGTCTGGCCTGTAAGGGACTGGATCGGCTGGAGGAGAAGATCCCAGCCCTGCAGTACCCTCCAGAGAAGAAACTGAGTCCCATGGTTTGGCCCAAGTTTAGCCTAGGTTATGACCCTGTAAAATGCAGTTTGGTTCTTTACCCGCAGCTGGCATCGGGCATTGCTGAAGTGGTCACTTCCACAGTGCAGACCGCAAAGAATGGACTCNNNNNNNNNNTCAGCAGCACCACCGAGAGGGCTTTCACCCTGGTGCTGGGAGGCTACCAGCTGACCAAGAGCACCGTGAGCGACACTGTTGGCTACCTGCTCAGCAGCCGGCCGGTCCAGGTGGCGGAGGAAGGCGTGGACTCTGCGATTACCCTGACCGAGAGCCTGGTGAATTACATCCTCCCAGCCTCTCCAGACGAGAGAGACAAGGAGGCTTCACAAGGCCAAGGGTCTGATGTCACTCCAGCTGGGCAACAGCCGAGCAGCTTCAATAGACTGGGAGCCCTGGTTAGCACTATCTACAAACGTGCGTACGAGCAAACCACCGCTCAGCTACGGCGCACCAGGACTCAAGGACAGAAGCTGGTGTTCTGGGTACCTGGAGTGGCTCCAATG

Function

GO: NA

KEGG:

id description
K08768 PLIN1; perilipin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007880 True 849 mRNA 0.55 5 35840153 35852765

Neighbor

gene id symbol gene type direction distance location
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding downstream 104336 35718024 ~ 35735817 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding downstream 174682 35649844 ~ 35665471 (-)
AMCG00007875 NA coding downstream 202233 35625810 ~ 35637920 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding downstream 246016 35556250 ~ 35594137 (-)
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding downstream 1035275 34796895 ~ 34804878 (-)
AMCG00007879 NA coding upstream 3123 35855888 ~ 35859285 (-)
AMCG00007882 NA coding upstream 78477 35931242 ~ 35941429 (-)
AMCG00007886 NA coding upstream 185681 36038446 ~ 36060653 (-)
AMCG00007885 NA coding upstream 269505 36122270 ~ 36142643 (-)
AMCG00007887 NA coding upstream 327144 36179909 ~ 36267806 (-)
G27023 NA non-coding downstream 236978 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 287646 35550871 ~ 35552507 (-)
G26995 NA non-coding downstream 302517 35537304 ~ 35537636 (-)
G26994 NA non-coding downstream 308715 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 1023233 34816694 ~ 34816920 (-)
G27107 NA non-coding upstream 173958 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 176704 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 249541 36102306 ~ 36149276 (-)
G27173 NA non-coding upstream 509706 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 615321 36468086 ~ 36468452 (-)
G26961 LOC101154678 other downstream 970346 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 4024002 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4497361 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4593504 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6826206 29001049 ~ 29013947 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 150428 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 989710 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1387319 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1642146 37494911 ~ 37499392 (-)
G27437 NA other upstream 1714852 37567617 ~ 37569284 (-)

Expression


Co-expression Network