AMCG00007882


Basic Information

Item Value
gene id AMCG00007882
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35931242 ~ 35941429 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007882
ATGCTGTTCCTTATGTTTGTGCTAGAAATGAACGACACTCTTCGCAGACAAAAGCCCCCCATGATCCTTTACTCTCCGGCTTACCAGCTCAATGCCAGCTGTGAGGTGGGCTCCACACTACCATGCAACAGGAGTGCTGGTGGGGAGGTTTTCCAGCTGCCCACCTTCTCCACAGCTGCCAAGGCCCGGGTGATCATAACGTTTGTGTTGTGCGTTGTCTCAGCATTCTGCAACCTCGCCGTCCTCTGGGCGGCCAGCACCAACAATAAGAGAAAGTCCCATGTTAGGATTCTTATCATAAACCTGACCGCTGCCGACCTTCTTGTCACCTTCATTGTGATGCCCCTGGATGCGGTGTGGAACATTACCGTTCAGTGGCAGGCGGGGGACGTGGCTTGCAGGCTGCTCATGTTCTTGAAGCTTTTGTCCATGTACTCCTGCGCCTTTGTGACGGTGGTTATCAGCCTTGATCGCCAGTCAGCCATCCTGAACCCACTGGCGATCAACGAGgccaagaagaaaaacaagatcaTGCTCTCCGTGGCATGGGCCATGAGCATTTTACTGTCAGTCCCACAGatgTTCATATTCCACAACGTCACCATCACAGTTCCTCAAAACTTCACTCAGTGCACCACCAGGGGGAGCTTTAGCAAGCACTGGCAGGAGACAGTCTACAACATGTTCACCTTCGTGTGTCTCTTCCTGCTGCCCCTGGTTATTATGATCTTCTGCTATACCAGAATCCTTATCGAAATCTCAAAACGAATGTCAAAAGGAAACATTTCTTCTAAAGAAGTGCATCTGCGGCGCTCAAAAAACAACATCCCCAAGGCGCGGATGAGGACGTTGAAAATGAGCATCGTTATAGTGACTTCATTCATCGTCTGCTGGACCCCTTACTACCTGCTGGGTTTGTGGTACTGGTTTTCCCCCGACGTGTTGGAAGAGACTATCTCCCATTCCCTGACCCATATACTCTTCATTTTCGGTCTGTTCAATACGTGCCTGGACCCTATCACCTATGGGCTTTTCACCATCCATTTTCGCAAGGGACTGAAGCGTTACTGCCACAGTGCCACTGTGCTGGCAGAGTCAGAGAACAACTCCACCATGACCGGCTCCTTTCGCTGCTCGGCCTCCTCCTTCCGCATGAAGAGATTCCCGGCTCTGGGGGTGGACGGGCAGGCGCTCAACAGCAgcaagaaagagacagagacgaGAGCTAGCTACCACACTAACGGTTATCTCACGGTCTACCACGATGGCTCGAGTGACAGGAATCAGTTAGGCCTAGGCAACATGATATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007882 True 1311 mRNA 0.51 3 35931242 35941429

Neighbor

gene id symbol gene type direction distance location
AMCG00007879 NA coding downstream 71957 35855888 ~ 35859285 (-)
AMCG00007880 NA coding downstream 78477 35840153 ~ 35852765 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding downstream 195425 35718024 ~ 35735817 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding downstream 265771 35649844 ~ 35665471 (-)
AMCG00007875 NA coding downstream 293322 35625810 ~ 35637920 (-)
AMCG00007886 NA coding upstream 97017 36038446 ~ 36060653 (-)
AMCG00007885 NA coding upstream 180841 36122270 ~ 36142643 (-)
AMCG00007887 NA coding upstream 238480 36179909 ~ 36267806 (-)
AMCG00007891 NA coding upstream 362977 36304406 ~ 36306372 (-)
AMCG00007890 LOC108439026 coding upstream 366135 36307564 ~ 36314143 (-)
G27023 NA non-coding downstream 328067 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 378735 35550871 ~ 35552507 (-)
G26995 NA non-coding downstream 393606 35537304 ~ 35537636 (-)
G26994 NA non-coding downstream 399804 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 1114322 34816694 ~ 34816920 (-)
G27107 NA non-coding upstream 85294 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 88040 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 160877 36102306 ~ 36149276 (-)
G27173 NA non-coding upstream 421042 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 526657 36468086 ~ 36468452 (-)
G26961 LOC101154678 other downstream 1061435 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 4115091 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4588450 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4684593 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6917295 29001049 ~ 29013947 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 61764 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 901046 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1298655 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1553482 37494911 ~ 37499392 (-)
G27437 NA other upstream 1626188 37567617 ~ 37569284 (-)

Expression


Co-expression Network