AMCG00007883 (chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999)


Basic Information

Item Value
gene id AMCG00007883
gene name chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36003193 ~ 36010995 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007883
AGGTCCAGGGGCGTCGGAATGAGAAGTTCTATGACTGCTGTGAAGAGCCGTACCCCGACGTGACGTTCACGGTGATCATGAGGCGCCGCACTCTCTACTACGGCCTGAACCTGCTTGTCCCCTGTGTGCTCATCTCAGCGCTGGCTCTGCTCGTCTTCCTGCTTCCTGCTGACTCGGGAGAAAAGATCTCTCTGGGAATCACAGTGCTCTTGTCACTCACTGTCTTCATGCTGCTGGTTGCAGAGATCATGCCAGCGACGTCAGATTCTGTGCCTTTGATAGgtgtctgttttcctttttctgggCAGTACTGGAGTGACTACTACCTCCAGTGGAATATCTCTGACTATCCTGGTGTGAAGAATGTCAGATTTCCTGATGGACAAATATGGAAGCCAGATGTTCTTCTCTATAATAGTGCTGATGAGAGATTTGATGCCACCTTTCACACCAATGTCCTGGTGAATTCCTCTGGCTATTGTCAGTACCTCCCACCAGGTATCTTCAAGAGCACTTGCTACATAGATGTGCGCTGGTTCCCCTTTGATGTGCAAAAGTGTGACCTCAAGTTTGGCTCCTGGACCTATGGTGGCTGGTCCCTTGATTTACAGATGCTGGAGGCTGATGTGACTGGATACATTGCCAATGGGGAATGGGACCTTGTA
>TU33928
TATTGCTTCAGTGTTTGGCTATATTTCCTCACAAGgtgtctgttttcctttttctgggCAGTACTGGAGTGACTACTACCTCCAGTGGAATATCTCTGACTATCCTGGTGTGAAGAATGTCAGATTTCCTGATGGACAAATATGGAAGCCAGATGTTCTTCTCTATAATAGTGCTGATGAGAGATTTGATGCCACCTTTCACACCAATGTCCTGGTGAATTCCTCTGGCTATTGTCAGTACCTCCCACCAGGTATCTTCAAGAGCACTTGCTACATAGATGTGCGCTGGTTCCCCTTTGATGTGCAAAAGTGTGACCTCAAGTTTGGCTCCTGGACCTATGGTGGCTGGTCCCTTGATTTACAGATGCTGGAGGCTGATGTGACTGGATACATTGCCAATGGGGAATGGGACCTTGTAG
>TU33930
TGCAGAGGTCCAGGGGCGTCGGAATGAGAAGTTCTATGACTGCTGTGAAGAGCCGTACCCCGACGTGACGTTCACGGTGATCATGAGGCGCCGCACTCTCTACTACGGCCTGAACCTGCTTGTCCCCTGTGTGCTCATCTCAGCGCTGGCTCTGCTCGTCTTCCTGCTTCCTGCTGACTCGGGAGAAAAGATCTCTCTGGGAATCACAGTGCTCTTGTCACTCACTGTCTTCATGCTGCTGGTTGCAGAGATCATGCCAGCGACGTCAGATTCTGTGCCTTTGATAG

Function

symbol description
chrna7 Enables several functions, including acetylcholine binding activity; amyloid-beta binding activity; and postsynaptic neurotransmitter receptor activity. Involved in several processes, including negative regulation of amyloid-beta formation; positive regulation of MAPK cascade; and positive regulation of angiogenesis. Acts upstream of or within negative regulation of tumor necrosis factor production. Located in plasma membrane. Part of acetylcholine-gated channel complex. Implicated in schizophrenia. Biomarker of Alzheimer's disease and Lewy body dementia.

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007883 True 665 mRNA 0.50 5 36003194 36010990
TU33928 False 419 lncRNA 0.46 3 36003193 36005750
TU33930 False 287 lncRNA 0.55 2 36009476 36010995

Neighbor

gene id symbol gene type direction distance location
AMCG00007882 NA coding downstream 61764 35931242 ~ 35941429 (-)
AMCG00007879 NA coding downstream 143908 35855888 ~ 35859285 (-)
AMCG00007880 NA coding downstream 150428 35840153 ~ 35852765 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding downstream 267376 35718024 ~ 35735817 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding downstream 337722 35649844 ~ 35665471 (-)
AMCG00007886 NA coding upstream 27451 36038446 ~ 36060653 (-)
AMCG00007885 NA coding upstream 111275 36122270 ~ 36142643 (-)
AMCG00007887 NA coding upstream 168914 36179909 ~ 36267806 (-)
AMCG00007891 NA coding upstream 293411 36304406 ~ 36306372 (-)
AMCG00007890 LOC108439026 coding upstream 296569 36307564 ~ 36314143 (-)
G27023 NA non-coding downstream 400018 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 450686 35550871 ~ 35552507 (-)
G26995 NA non-coding downstream 465557 35537304 ~ 35537636 (-)
G26994 NA non-coding downstream 471755 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 1186273 34816694 ~ 34816920 (-)
G27107 NA non-coding upstream 15728 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 18474 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 91311 36102306 ~ 36149276 (-)
G27173 NA non-coding upstream 351476 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 457091 36468086 ~ 36468452 (-)
G26961 LOC101154678 other downstream 1133386 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 4187042 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4660401 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4756544 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6989246 29001049 ~ 29013947 (-)
AMCG00007907 NA other upstream 831480 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1229089 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1483916 37494911 ~ 37499392 (-)
G27437 NA other upstream 1556622 37567617 ~ 37569284 (-)
G27439 NA other upstream 1559962 37570957 ~ 37571488 (-)

Expression


Co-expression Network