AMCG00007884


Basic Information

Item Value
gene id AMCG00007884
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36017687 ~ 36019684 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007884
cTCAATATTTTGCTACAACCATGGTGATTGTGGGTCTGTCAGTAATTGTCACCGTCCTGGTTTTACAATACCATCACCACGATCCTGATGGGGGTAAAATGCCAAAATGGACACGTATAATCCTCTTGAACTGGTGTGCCTGGTTCCTACGAATGAAAAGGCCTGGGGAAGAAAAAGTCCGGCCAGCCTGTCATCACAAGCAGCGGCGTGGCAGTATCTGCAGTATGGAGCTCAACGCCAGCACTGGGGCACAGCAGCCCAACAATGGGAACATGCTCTACATCGGCTTTCGCGGGCTGGAAGGCGTGCACTGCGCGTCTACTCCCGACTCGGGGCTGGTGTGCAGCCGCTTATTGGGCGCAACTGAGGAGGAAGTGTTGCTGCCAGGGGGCCATGGCTCCTCCGTGTGCAGCGGAGACCCCGAGCTGGCCAAAATCCTGGAAGAGGTGCGCTACATTGCGGGGCGTTTCCGAGACCAGGACGAGGACGAGTCGGTCTGCAACGAGTGGAAATTCGCGGCGTCTGTCATCGATCGCCTCTGTCTCATGGGATTCTCCGTCTTTACCATTCTCTGCACCATTGGCATCCTGATGTCAGCCCCTAACTTTGTGGAGGCCGTCTCAAAAGACTTCACC

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007884 True 635 mRNA 0.56 2 36017687 36019684

Neighbor

gene id symbol gene type direction distance location
AMCG00007881 NA coding upstream 86199 35860631 ~ 35931488 (+)
AMCG00007878 si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031 coding upstream 202620 35811726 ~ 35815067 (+)
AMCG00007872 LOC106561144,LOC106573775 coding upstream 468780 35537561 ~ 35548907 (+)
AMCG00007871 NA coding upstream 693797 35320619 ~ 35323890 (+)
AMCG00007870 NA coding upstream 788963 35222464 ~ 35228724 (+)
AMCG00007888 NA coding downstream 265299 36284983 ~ 36294189 (+)
AMCG00007892 NA coding downstream 384984 36404668 ~ 36425781 (+)
AMCG00007896 NA coding downstream 465302 36484986 ~ 36489446 (+)
AMCG00007895 NA coding downstream 507681 36527365 ~ 36534128 (+)
AMCG00007894 LOC106562351,LOC107554933 coding downstream 520899 36540583 ~ 36569423 (+)
G27089 NA non-coding upstream 16753 35987301 ~ 36000934 (+)
G27079 NA non-coding upstream 114428 35903044 ~ 35903259 (+)
G27052 NA non-coding upstream 174845 35807368 ~ 35842842 (+)
G27025 NA non-coding upstream 409050 35608423 ~ 35608637 (+)
G27021 NA non-coding upstream 414505 35595413 ~ 35603182 (+)
G27108 NA non-coding downstream 9774 36029458 ~ 36030333 (+)
G27111 NA non-coding downstream 82612 36102296 ~ 36182722 (+)
G27139 NA non-coding downstream 286290 36305974 ~ 36306877 (+)
G27154 NA non-coding downstream 309736 36329420 ~ 36390820 (+)
G27187 NA non-coding downstream 409722 36429406 ~ 36429931 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 396886 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2222746 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 4577309 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6198135 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 6292953 29622311 ~ 29724734 (+)
AMCG00007889 NA other downstream 276534 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 1184186 37203870 ~ 37216558 (+)
G27518 NA other downstream 2125300 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 2148886 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 2336245 38355929 ~ 38423155 (+)

Expression


Co-expression Network