AMCG00007887


Basic Information

Item Value
gene id AMCG00007887
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36179909 ~ 36267806 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007887
ATGACTCTTGAGCAGCACCACAGCAGCCAAGCCACAGACAATATCTCAAAAATTGAGCACCTCTCTCACCTATCAGAGCTGCGTGTACTAAACCTCGCTGGAAACAGCATTGGCTGTGTGGAGAATCTCAAGGGATTGGACTCCCTGACCGAACTCAATCTGAGACGCAACTGCATCACTACTGTGACAGATGTAGACTGCCTGCCCTGCCTGCAGCGGCTCTTCCTCAGCTGCAACAACATCGCCAGTTTTGACGACCTTGTCTGCCTTGGAGACTCCCGCTCATTATCTGAGGTCACCCTGGATGGGAATCCTCTAGCCCAGGAGACATGGTACAAACAGACTGCCCTACGCTACATGGTTCAACTAAGACAGCTGGACATGAAGCGAATCACAGAAGAGGAACGCCGAATGGCATCTGTCTTGGCACGGAAGGAGGACGAAAAGAGACGAGAGACCCACAAGCAAGCTATTCACAAGgAGAAGCGTCGCCTGGCGATCCGGAACGCAGCACAGCAGTGGGAGGCTCACAGTGTGAAGCACAGTCCCAAGGTCTGTCTGGAGCTGCCAGCACAGAGTGGCACTAAGGAAGACGATAACTCTGAGCACAGCACTAGCCAGCTCAATGGCATCACTCGCCAGCTTTCTCCAGAGGAGCTCAGGTGGTCGGAATTGGCAGGGGGCACAGGGATCCAGAGCCTATCCCTTTCAGACTCCCACCTGGCGGAGCTGGATGGGGACACGGTACGGTTCTTTGGACCTGGAGCCCTAGAAGCCCTGGAGCGCGGCTGGGGGGTGCAGACCGCAGGCGCCGTCACAGTCATCGCCTTTCGCTACATCGACTATGACACCATTGTGCCCACGCTCACCCGGATCCGCATCAAGTTTCCCAACGTCACGcACTTGATCTTCTCAGACACCAACATTAACCAGCTGCTCCAGCTTGCTGCACTGGCCCAGGTCAGGCGGCTCGATCAGTTGACTATCCACCCTCAGGGAAACCCCGTGGTCAGCCTGGCTCTCTGGAAGTCCTTTGCTATCTACCGGCTCAACCACTTCAACCTGCAGAGGATCAATGGCCAAGAGGTAACCATGAATGATGTTATAATGGCAGAGAGGCTGTTTGGAACATTGGGTCACATCGCAGCGACTGAAACGCCACACTAtcgtctgctgctgctgctggaagaGTCCAGGAAGCGGCAGCTGCAGTTTGTCCTGGAGGGCCGAGGGCGGAGGGCAGGTCTGAGCCCCGAGGAGCTGAGGGAGAATGGCAAGCTCTTGGGTGAGGGACTTGGCAGGTCCCTCTTCAACTACCCCAGCCGAGACCCTGGCGCTGATAGCAGCGAGGAAGCTGACCCAGATGGGCCAGACAGGACTCAGGAGAGCCAGGAGTATTTGCGGCAACTGGTGCAGAGGGCCGCTGACACGAATTTGAAAGGAGAGTCCCTGCACAAGCTGTGGCCCTCACTGTTTGTGGAGCTGGTCAGAGACAGCGTGCTTGACATGAGGGACCAACCATCCTACCGCCAAGCCTGTTTACAGAAGATTTCACAGGCCAAATAA

Function

GO: NA

KEGG:

id description
K16606 LRRC49; leucine-rich repeat-containing protein 49

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007887 True 1566 mRNA 0.56 11 36179909 36267806

Neighbor

gene id symbol gene type direction distance location
AMCG00007885 NA coding downstream 37266 36122270 ~ 36142643 (-)
AMCG00007886 NA coding downstream 119256 36038446 ~ 36060653 (-)
AMCG00007882 NA coding downstream 238480 35931242 ~ 35941429 (-)
AMCG00007879 NA coding downstream 320624 35855888 ~ 35859285 (-)
AMCG00007880 NA coding downstream 327144 35840153 ~ 35852765 (-)
AMCG00007891 NA coding upstream 36600 36304406 ~ 36306372 (-)
AMCG00007890 LOC108439026 coding upstream 39758 36307564 ~ 36314143 (-)
AMCG00007893 NA coding upstream 163341 36431147 ~ 36465435 (-)
AMCG00007901 LOC107712968 coding upstream 462515 36730321 ~ 36743469 (-)
AMCG00007908 NA coding upstream 602325 36870131 ~ 36879680 (-)
G27123 NA non-coding downstream 30633 36102306 ~ 36149276 (-)
G27109 NA non-coding downstream 149597 36029469 ~ 36030312 (-)
G27107 NA non-coding downstream 152926 36026723 ~ 36026983 (-)
G27023 NA non-coding downstream 576734 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 627402 35550871 ~ 35552507 (-)
G27173 NA non-coding upstream 94665 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 200280 36468086 ~ 36468452 (-)
G27197 NA non-coding upstream 223390 36491196 ~ 36491846 (-)
G27243 NA non-coding upstream 476262 36744068 ~ 36745866 (-)
G27252 NA non-coding upstream 492539 36760345 ~ 36760589 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 168914 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 1310102 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 4363758 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4837117 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4933260 31192010 ~ 31246649 (-)
AMCG00007907 NA other upstream 574669 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 972278 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1227105 37494911 ~ 37499392 (-)
G27437 NA other upstream 1299811 37567617 ~ 37569284 (-)
G27439 NA other upstream 1303151 37570957 ~ 37571488 (-)

Expression


Co-expression Network