AMCG00007888


Basic Information

Item Value
gene id AMCG00007888
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36284983 ~ 36294189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007888
CTCCATACTTCAgcacatacttttattttaagtatgatgtttttacaaaacaaaaacaaaacaaatccaattttGGAATAATGTGCAGATATATAGGAAATTGATCACAAAACCAGTCACAcattacaataatgggcaccgattcttaattaatttatgtatttataccacaggaataacacatgcatacctCATTTAATTCACCCgtgttctgctgttaatcacatatATAAAAAGGTGAACAATGTGTCAAGACAAAGATGAAAAATGACAGGCCTGATGGTACAGCAGGAGAGAATTTTGAGCAAGTAACATTAGGGAGCAATTTACTCAAGGATTTCCTTGTTACATCACTAATCTGACAAAAATGCCATTGGGTCTTCAAATTCAATCATTTAGAACCAATTAAAAAGGATTCAAGTGCATGCAGAAGCTTGTGAATTATACCCTATTTGGATGGTGATGTTTAGACAGCTAGGACAGCATGTTGTGAAACAGGCGAGGGCAGAACATACACGCAGCAGATGAAGTGCTAACCGTCTTCTACACAGCGATCACAGGTGCTTGGAGCATTGCTCCCAATGGTATCCTAAGGTTAACCCAGATGGCTTGCCATCTCATCGAGTTTCAAAAACATCACTTCTGGCCagtgatatgtttttttttttttttttttatattgtttgttttgtgctaaTCACAGCAGTGGAATTACCCTAACACTCATCTCTGTTTTAATCGCAGAAAAATCAGCGTCTGTCACTCGGCCTTGTGCTCAGTACTGCGCCCATCTGCACTGATGCTGCAGACAAGGTCTTCTTACTCACACAGAACTGAAGGCAAGTGGGAAATTAGGGCACTGAGCCCACAAATCATGATCTTAACAAATTAGTTAGTTTCTCAGTGTTTCTCATCTGTGATCTCTGTAGCCATCCACATGGGAGTGTGATTTAACTAGGAGATATCcaccttttgaaaaataaacagataatcACAAGACACAAGACaagaaaaaataccaaaatgatTATCAGTTTGGTCAATGGAAAGATCAGAATAAGATATTAGGATATACTCAGTTATATAATGATGCTATACTGTATTTAGTTACTTCTTAAATTGTAgctaaaatgtatacatatgttagttaatataataactaaatctacatttaaatgtaatttcatatgCAAAAAGGAAATGTCCCCCCAAATTCCATCCTAGCCAGAGCACACCTTTGAAACTCTTTATGGGACTGATCTTATAGAGTGGGACAGAAATctattaatattgaataatcACTAGAAAACAGATTCAACAACAAAGCaagctctctgtctgtctcgcAGTGAACTTTAATTTAGGAGGCAGTAGAACTGACAGCTCATGAAAGCTCTGGGAATCCATTTGTCACAACATTCCCAACAACAAAAAGACCTCGAGTAGTATATCATGTTCAGAATGAAGAGTTTTCTTTAGCTTTTGAGCAAAGACTTGGATATTTTCAGAATGAAATAGTGGAACCGGGCCAGAGTGATTAAATGTCACTCATTAAATGTGAGttaattcaatacattaaatacaatatattatccATGACTGtagaattaatttacaaaagacACAGCTGAGGGCATCTAAATGATTggaaacattgtatttatgtcATTTAGATAAACAAGCTGCACtgttatacaattttaaaaaatagcacACTAAATCCCATTGTAAGCTATTTTAAAGCACAAGATGACTAATCTAAACAACCAGTCTGTTTTGCAAAGTTGCTCTTCGGATAATAACATAGAAACATTTAAAGAGGACAAACATGTAACTTTCTGCAAATGAAAACTTTATTAAAGGGGAGGCTTTTTTGTTTAGGTATCCAGAATTTCGTGCCATGCACAtgattttgccttttttaaatagacACACTTTTTGCATGATGCAGGGAGTTTTGAGCATAAACATCTATTACAGCTCAGACAATAAGACACGATGTGCAATACTAAGCAAGCTTTGAAATCCCAGACTTAAATTCAGTCACTGTTATTTCACCTGCTGCATCGGCAAACTGTGTCCACAGCCAGGCCTTGTATCAATAGGAACAGTTCACCCTGCTGCTTTACACTGTATGCTGCCCCATACCTCACACATCAATTAGACTTGTGCAACGTAATTAAGTGCGGGTTTCTCAAAGTGAATCACGCACCTGACTGAGCAAAGGCATTACCTCATACAGTGCTTAATTGCAGTTTTTTGTTGACACGTTGGGAATAGCCAGTCTCAGTTTAGCATGCAGCATAGATTGTCTTACAAAATTACATTAGcatgttttctttacagttCCCTTTTATAATTTACAACAATACACTTTCTTTATGTGTggacatacaaaatacaatgttgGAAAATGTGAGAggaaaatgtttcacaattaGAATACAACAattgtactactactaccaccactacaGTTGCTAACAAGTCCTTTTAGCTTTGGCATAGCCTACAGCTTTTGTTAATTAAGACCCTTGTTTCCAGGCATGCCAATTAAATCGAGCACCGTGGCTATCATCACCAATTGCACAACAGGTAATGCATCTATGATGTGTATCTATGATGGAATCGCGAATTCGAATCTATTTTTAGTTCTGCAAACCAGTCAAATCCCTTCGCAATCCTATTATTCAATTTGCAAGTCTAAATCACACTATGTGGGTCGGACACCATGATTGGCGGGTTGCTCTCTTCTCATTGTTTTATTGCACCATCACTTAAAAACGTGGGTTTCCTCactaatttataaatattgcgTTGAGGGCGAAAAGGAGGGCCCATCATTTCCCTGAGGTGAAGACGCAAGATGCACGCTTTGGTGAATGCGTTTCTCCGCTGTCTGTTCCTATTGCTCCCCCCCCCGTGGTTTCAGCTCGGCTTTTGCTGGTGGGTTGGGGATGAGTGCGGAAAGACGCTGTGGCCCAATCCCAGGGCTCGTTTCAAAGGGAGAAAGCCTCTTGCACATCAGGAAGTAACACAAGACGCGGCCATCCCCTCCTCTTCCCCTCCTGCTCGGTGCGCCTCTCCGGCAGCAGCCTCACCGCCGCCCCCGGGATCTCCTTTGCGGAGAATCTGGGAGCTCTGGTCGGCTTTGGAGCGCAACTTCGGGGCTCCCTTCTCGTTGCCCCAGCGCCTGTTCCCCAAGCGTTGGGCTGCACCCGCAAAACGGGCGTGTGAGCCGACGGGTGCCAGTGCCGGACGAGACGTGTGCGTCTCTGAACAGGAGCCGAGCGCAACAGTGTTACAGCAAGAGGAAGACGCAGACCCAGCGACGCTCCCACAGGCAGGCACCGGCAGCTCGATGGAGGTGCCCGGCTTCTCCGATCCCGCGTCGGATTCAGTCGCGGTTCGGGTCGCGGAGGCGGCCACTGACACGGGCTTTGATCTGGAGGAGCGGCTGCTGCAGGAGATGGGGACCCAGATCCAGATCCGAGTGGCGATCCAGGCGGCGGAGGACGAGGACCCGGAATGCGAATTGACCCTAGATCACCTGGACTTCCGAGGGGGCAGTTGCAGTGAGGATGATCTCGGGAGACACGATAAATCCAGTGGGGCTGGAACCAGTGGAGGGGAGCATGAGGAGCAGAGCTGGCAGCCCCCAGACCCTGAGCTGACTCAGAAACTCATCACTCAGATCGAATACTACTTGTCAGATGAGAACCTGGAGCGCGATGCCTTCTTGCTTAAACACGTCCGACGCAACAAGCTGGGGTTTGTCAGCGTCAAACTGCTTACTTCCTTCAAAAAGGTAAAACACCTGACGAGAGACTGGCGAACAACGGCCTACGCGCTTCGGCACTCTGAGCTGCTGGAACTGAACGAGGAGGGAAGAAAAGTGCGTCGCAAGGCAGCAGTGCCAGTCTTTGCCAGTGAGAACCTTCCCAGCCGCATGCTGCTGGTCAGTGAGCTGCACCTGTGGCCTGATCTGTGCCCTTCCCTGGAGAGCGAGGGGAGCTCTGCGGCCCATCAAGAGCGGCTGATGGAGCTCCTCCTCAAAGCCTTCGGGGTGTATGGAGTGATTTCCTCGGTGCGAATTCTCAAGCCAGGCAAGGACCTGCCTCCTGACCTGAAGAAGCTGAGCGGCCGCTATTCTCAGCTTGGCACGGTCGAGTGTGCAATCGTGGAGTTTGAAGAGATCGAGGCTGCTGTTAAGGCTCACGAGGTGATGGCTGGTGAAGAAGAGGGGGGAAGCCTCACAGGGGTCAAGGTGGTCCTGATCGGGACCAAGCCTCCCAAGAAGAAAATCCCCAAGGACCGCCAGCGGGAGGACGGGGGCCAGCGCAAGAGCCGTTCTCTCAACAGCAGAGTGCGGGAGCTGCAGTACCTGGTCGACGACTCGGCCTGCAGTTCCTCAGAAACGGAGAGCAACCCCACCTCTCCCCGGCTGACCCGTAAAACTCGACCGGGCAACAAGCTGAGCCCAGTTGGGGGGGGTGGATACCAACAGAACAACCACCTCAGTCCTGGTGTGTCTCCCCGCTCCAGCCCCTGGAACAGTCCCCGCACCAGCCCCTCTGCCCAGCGCAAGTCCCCACATTCCCGCAAGTCCCCTCTGGTCAGCGAGGGCAGGCTGAGCCCCGAGCCCAGCCGCAAGTGGGCGGACTACTCCTCGGACAGCAGCCTGACTCCCTCTGGCAGTCCCTGGGTACAGCGCCGTAGACAGGTAGCCTCACAGGAGAGCAGCCCTGTTGGGAGCCCGATGCTTGGCCGCAAGATCCAGAATGCTGATGGGCTTCCCCTTGGGGTGGTACGACTCCCTCGAGGGCCTGATGGGACTAGGGGCTTCCACAGTGCTTTGGCTGAGGAGAGGAGCAAGCCCGTATCATGTGCAACCTGATTTAAGGAGGAAGGGAGTGGCGTTTTCTCACGCCAAAAATTGCCATTGCAGAGATCAATACTTCATCGTAGGAGCTTGGAAACTTtgctttgtaatttaatttggatGCCATATTTTTGGCTTTTCCTACATGTTTGGTACATTTTTtgtaagttttttatttttatttttatttaagcagtTAGGTGAAACTgaaaaggcatttatttttcttcatttaagaCCATGCGTTTCCTAAAAGTGACCattttgtatgtgaaatattgtAAAGGTAGACCGTTGCTAGTGAAATTattccagtttaatttaatgtaaaattgcCCACTTTAATGTCAACACCAGAGAACAAGTTGTAAATGGTATTGTTTTCATACGGTTTGTGAGGTTTGCATTCCAAAAGTTTTGGACTTCATGTAGAAATCTGAACAATTTGGCCGATACCTTGTAAAGGTATAATGTGCAAATAAGCTATAATTGTGGTCCACAGCCCACAGATTTGGCCTGAAAGGGTGTTGCTGGTAATCTCTATTTTGCATGCAATACATCCAGGTTAAGGTTGAGGGTTGTTGCTATGGACTCCTCCCCCTCACTTGTAATATTGTAATCTGCCTTAATATTGAATATCAAGAAATGTCctttcatgtgtgttttttttttttttaacttgttttattgGTTTTTGCCCTCCAGCCCTTTTATGATCAGGTGGTTTTAAAAGCTGGCTTTTAGGGGGCTGTACTTCATGTAGACTTTGAATGGATGTGTAAGGGATCAGAGGGTCAATGTAGGAACTCTCCCCTGACTTGTGGGCAAGGTTCATCCAAGCTCCCTCCTTATTTGAGAGGTTTTGCACATTCTGggattataaaatgtatattgtatgtccccatgtacaaaataaagcactgaaatGGCATTA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007888 True 5816 mRNA 0.45 3 36284983 36294189

Neighbor

gene id symbol gene type direction distance location
AMCG00007884 NA coding upstream 265299 36017687 ~ 36019684 (+)
AMCG00007881 NA coding upstream 353495 35860631 ~ 35931488 (+)
AMCG00007878 si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031 coding upstream 469916 35811726 ~ 35815067 (+)
AMCG00007872 LOC106561144,LOC106573775 coding upstream 736076 35537561 ~ 35548907 (+)
AMCG00007871 NA coding upstream 961093 35320619 ~ 35323890 (+)
AMCG00007892 NA coding downstream 110479 36404668 ~ 36425781 (+)
AMCG00007896 NA coding downstream 190797 36484986 ~ 36489446 (+)
AMCG00007895 NA coding downstream 233176 36527365 ~ 36534128 (+)
AMCG00007894 LOC106562351,LOC107554933 coding downstream 246394 36540583 ~ 36569423 (+)
AMCG00007897 csk,LOC107089925,LOC108264088,LOC103138042 coding downstream 328864 36623053 ~ 36644439 (+)
G27111 NA non-coding upstream 102261 36102296 ~ 36182722 (+)
G27108 NA non-coding upstream 254650 36029458 ~ 36030333 (+)
G27089 NA non-coding upstream 284049 35987301 ~ 36000934 (+)
G27079 NA non-coding upstream 381724 35903044 ~ 35903259 (+)
G27052 NA non-coding upstream 442141 35807368 ~ 35842842 (+)
G27139 NA non-coding downstream 11785 36305974 ~ 36306877 (+)
G27154 NA non-coding downstream 35231 36329420 ~ 36390820 (+)
G27187 NA non-coding downstream 135217 36429406 ~ 36429931 (+)
G27216 NA non-coding downstream 391121 36685310 ~ 36727117 (+)
G27253 NA non-coding downstream 473464 36767653 ~ 36767939 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 664182 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2490042 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 4844605 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6465431 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 6560249 29622311 ~ 29724734 (+)
AMCG00007889 NA other downstream 2029 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 909681 37203870 ~ 37216558 (+)
G27518 NA other downstream 1850795 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1874381 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 2061740 38355929 ~ 38423155 (+)

Expression


Co-expression Network