AMCG00007889


Basic Information

Item Value
gene id AMCG00007889
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36296218 ~ 36302841 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007889
ATGGAGCACCTGTGCCATGCGACCAACCAGGTTCCTACTCAGAAAGAGGAGACAGAACTGCTCTTGACCCTCCCCCCTGACAGGATTGGCCACGGCACCTTCCTGCACTCGGATGTGGGCGGGTCCCAGGCGCTGGTGGATTCAGTGAGAAAGGGAAACATCCCATTGGAACTCTGCTTGACTTCCAATGTCAAAGGCCAGACTGTTGCATCCTACGAGAAGCATCACTTCCCATACTGGTATCGGCTCGACCACCCCTGTGTCTTGTGTGCGGATGATAAGGGAGTCTTCAGCACTGACCTTTCCCAGGAGTACCAGCTGGCTGCTACCACGTTTGGCCTGAGCCAAGAGGCTGTGTGGTCTCTGTCTGAACAGGCCATTGATCACAGCTTTGCACCCTATTCCCTCAAGCAGGACCTGAGGCAGAGATGGGCTGATCTGCGACCCCATGTGCTCAACAAA
>TU33975
ATTGACAGCCAACTCTTCCTCTAGAACGAAAATACTTCTTTCATTCTCATCCCTAAAATATAGCCTCTTCAGTTCTGTTTATGCTCATAGAGCTGCTCAGTGTGCAACATGTTGTCATTTAGTGTCTTTGGTCTGTCAGGTTCCTACTCAGAAAGAGGAGACAGAACTGCTCTTGACCCTCCCCCCTGACAGGATTGGCCACGGCACCTTCCTGCACTCGGATGTGGGCGGGTCCCAGGCGCTGGTGGATTCAGTGAGAAAGGGAAACATCCCATTGGAACTCTGCTTGACTTCCAATGTCAAAGGCCAGACTGTTGCATCCTACGAGAAGCATCACTTCCCATACTGGTATCGGCTCGACCACCCCTGTGTCTTGTGTGCGGATGATAAGGGAGTCTTCAGCACTGACCTTTCCCAGGAGTACCAGCTGGCTGCTACCACGTTTGGCCTGAGCCAAGAGGCTGTGTGGTCTCTGTCTGAACAGGCCATTGATCACAGCTTTGCACCCTATTCCCTCAAGCAGGACCTGAGGCAGAGATGGGCTGATCTGCGACCCCATGTGCTCAACAAAGTATGTTtgtaataaagcatttttttctaa

Function

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0019239 deaminase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007889 False 462 mRNA 0.55 4 36296218 36302811
TU33975 True 601 lncRNA 0.50 3 36301497 36302841

Neighbor

gene id symbol gene type direction distance location
AMCG00007888 NA coding upstream 2029 36284983 ~ 36294189 (+)
AMCG00007884 NA coding upstream 276534 36017687 ~ 36019684 (+)
AMCG00007881 NA coding upstream 364730 35860631 ~ 35931488 (+)
AMCG00007878 si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031 coding upstream 481151 35811726 ~ 35815067 (+)
AMCG00007872 LOC106561144,LOC106573775 coding upstream 747311 35537561 ~ 35548907 (+)
AMCG00007892 NA coding downstream 101827 36404668 ~ 36425781 (+)
AMCG00007896 NA coding downstream 182145 36484986 ~ 36489446 (+)
AMCG00007895 NA coding downstream 224524 36527365 ~ 36534128 (+)
AMCG00007894 LOC106562351,LOC107554933 coding downstream 237742 36540583 ~ 36569423 (+)
AMCG00007897 csk,LOC107089925,LOC108264088,LOC103138042 coding downstream 320212 36623053 ~ 36644439 (+)
G27111 NA non-coding upstream 113496 36102296 ~ 36182722 (+)
G27108 NA non-coding upstream 265885 36029458 ~ 36030333 (+)
G27089 NA non-coding upstream 295284 35987301 ~ 36000934 (+)
G27079 NA non-coding upstream 392959 35903044 ~ 35903259 (+)
G27052 NA non-coding upstream 453376 35807368 ~ 35842842 (+)
G27139 NA non-coding downstream 3133 36305974 ~ 36306877 (+)
G27154 NA non-coding downstream 26579 36329420 ~ 36390820 (+)
G27187 NA non-coding downstream 126565 36429406 ~ 36429931 (+)
G27216 NA non-coding downstream 382469 36685310 ~ 36727117 (+)
G27253 NA non-coding downstream 464812 36767653 ~ 36767939 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 675417 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2501277 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 4855840 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6476666 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 6571484 29622311 ~ 29724734 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 901029 37203870 ~ 37216558 (+)
G27518 NA other downstream 1842143 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1865729 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 2053088 38355929 ~ 38423155 (+)
G27551 NA other downstream 2129204 38432045 ~ 38436595 (+)

Expression


Co-expression Network