AMCG00007890 (LOC108439026)


Basic Information

Item Value
gene id AMCG00007890
gene name LOC108439026
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36307564 ~ 36314143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007890
CCGGAAAGCAGGAAGTAAGGAAGTGCAGAGTACGCGCTTCATGATGGCTGCGCACTGTACGTGGAGAAGGACGGAGAGAGAGCGCTGCGTTATGAAAGTCCATGGGATAATTGTGCTTTTGGCTCTGGATTGCTGTCTCCAACCTGTTAACGGTTACTTGAGCTCCCCTCATGCTGGCCACGAACCTCTCTATGAAAGAGAAGCTCAACAGAGTTCAATCCTCAGCAACCCCACCCCTTCTGCTGCTGTCAGTGTACAAGTGACAGATGCACCCAGCTACCCTGAAATATGTCCAAGTGGAGGGCTGTGCTCCAAGCTGCCGGCCGCCTGCATTAACTGCAGTGAGCACCACAACTGCACCTACGGCAAACCAGTAATTTTCCAGTGCCAAGTCAAACAAGGCATCCACTGCATAGGGGAAAACGGACAGCAGAGGACCAACTTCTCCCTCAACATGACATGTCAGTTTTGCTGGCAGCTGCCCCCCTCCCAGTACGGATGCACCAATTCCACCAGCTGCATGACTGTCGCCTGCCCTCGGAAACGATACAACGCCACCTGCAACGTCATGGACCACGTTCACTGTCTGGGGAAGCGTTCTTTCCCCAAAAGGCTGTACTGCAACTGGACAGGGGGTTACAAATGGTCCACAGCTTTGGCACTGAGTATAACTCTTGGAGGCTTTGGTGCAGACCGTTTCTACTTGGGCCAATGGCGGGAAGGCCTTGGGAAGCTCTTCAGTTTTGGAGGTTTGGGGATCTGGACCCTGATAGATGTGCTACTCATTGGGGTTGGCTATGTGGGACCAGCAGATGGATCACTGTACATCTGATCTTGCTGGTTAAAAGCCAAGCCATTGGCTGTCTGAGATCACAACTCACAATCCCAATCCTTTCACTTATACGGGCTCTGCTGAAGAGATGCCACCACACAGACCAGACTTTGCCCCCCCCACAAGCTTTTCCCTCTTTGTTGCTGCTGATcctactgaagaaaaaaaaaatgtttcatgcattaggaagtttttttatttgtatttagaaCTTTGCTCAAAATCTACTTTGAAAGACTCAAGCAAGGTGGGATTACACTAAATTGTCAATGTCATTTTGAATGAGGGGAAGACTGGGTATAAGCAAATCCCAAACTGAAGGAATTCTGTGGTGTCCAGTCTGGAGGGCACTGGTGTCGCACATCTGTAGTCTTCAGCCACTGGGATCTCTTCTCTCCAGCCATGGGGGAAACTATACAGTCTctgtagtgtgtatatattccTATAAATCGTCTCATTATTGGCACTATTTTGGTTTTCAGATAACATAAGGAGGAATGTTTCCAATGTTTATAAACAAAGGAGATTAGATGGTATAATCTTGGACgatagatttgtttaaatttattttctttgttttttttgttatggttTACAGGCTGGAAAACTGGTCTCAAGCCACCTTTTCCCCttttaatgttgtgtgtgtctgatgcCAAGTAAGACTGAGGTTTGGGCAAGACTGTTGAAGTCAGGCTTGTATGCTGCTGGGCAGCAAATGGGGAACTATTTAAAGGTCAAAATGCAAGATTCCTCTCCTGAGAATTGGTCTgtattgtaaagaaaataaaggggGATATAATTCCACTTAAAAAGTGGGAAAGCTGTTTTGTAAGTAAGATTGAGTTGTGACTGGAATGCTGTTTGTCTGTAATTTTGAACCCAGAACACATGGTTTCTTGTAATTGTTCCTTTTAAACAGTCAAAAGTGTGTCAAACCCAACATTTAACATTGCAGATGGTGAtgaacaaagtgcaaaaatgtataaaacaaaataaaatgtgtataaatatatttatagcagGACAGTGCTGGTCAATGGGAGAGACTTGCTTTCTGAGGCATAACTGTTCTGGGTTTACTGTTATGTGAAGtgctatttaaaatgattttgtattataaagaaatggtatataaaataaattcatacaacAGTGTGTAATTTAAAGAGCAAAAATGTGTAATGGGATGGCTCATGGTGATGCTTTTTGGGAATGCATGATTTATGCAGTTTGTCAACTACTTTTTCTGTAGTTCTGTATACATTTtgaccatttatttttcatttaacattggctaaagaaattatttttttctatctatttttttctaagtatttatttctattacaCCTTGGAAAAAATACTGTCACAGCTTTCACTGTACTGTCTGCAGACCAGTGAGCTCTATGACAGAGTTCTCTCAGactaacaagaaaaacaattagcCAATTCCCACAAATAGACAACCAATCAAATCAATATCATTGCTATGAATTATGCTGGTTTGGTTTATCCCACTGGAGAAAATAGTATAAAGAAACTTGGAGAAttcataggaaaaaaaaaaaagttgttttcatATTGCTGATAGATATTGAAAAGTAAACTAATAGAAAGTAAATGTGAGTCtgctttattattgtgtttttgtaattaccAATACATTTTGCCAGTTAAATAAGcctaga

Function

NR:

description
PREDICTED: TM2 domain-containing protein 3, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007890 True 2523 mRNA 0.41 6 36307564 36314143

Neighbor

gene id symbol gene type direction distance location
AMCG00007891 NA coding downstream 1192 36304406 ~ 36306372 (-)
AMCG00007887 NA coding downstream 39758 36179909 ~ 36267806 (-)
AMCG00007885 NA coding downstream 164921 36122270 ~ 36142643 (-)
AMCG00007886 NA coding downstream 246911 36038446 ~ 36060653 (-)
AMCG00007882 NA coding downstream 366135 35931242 ~ 35941429 (-)
AMCG00007893 NA coding upstream 117004 36431147 ~ 36465435 (-)
AMCG00007901 LOC107712968 coding upstream 416178 36730321 ~ 36743469 (-)
AMCG00007908 NA coding upstream 555988 36870131 ~ 36879680 (-)
AMCG00007911 LOC103464266,LOC105008435,LOC107595422,LOC107087943,LOC107666149,LOC108272058 coding upstream 571237 36885380 ~ 36900670 (-)
AMCG00007910 gdf5 coding upstream 622684 36936827 ~ 36941868 (-)
G27123 NA non-coding downstream 158288 36102306 ~ 36149276 (-)
G27109 NA non-coding downstream 277252 36029469 ~ 36030312 (-)
G27107 NA non-coding downstream 280581 36026723 ~ 36026983 (-)
G27023 NA non-coding downstream 704389 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 755057 35550871 ~ 35552507 (-)
G27173 NA non-coding upstream 48328 36362471 ~ 36364455 (-)
G27196 NA non-coding upstream 153943 36468086 ~ 36468452 (-)
G27197 NA non-coding upstream 177053 36491196 ~ 36491846 (-)
G27243 NA non-coding upstream 429925 36744068 ~ 36745866 (-)
G27252 NA non-coding upstream 446202 36760345 ~ 36760589 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 296569 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 1437757 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 4491413 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4964772 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 5060915 31192010 ~ 31246649 (-)
AMCG00007907 NA other upstream 528332 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 925941 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1180768 37494911 ~ 37499392 (-)
G27437 NA other upstream 1253474 37567617 ~ 37569284 (-)
G27439 NA other upstream 1256814 37570957 ~ 37571488 (-)

Expression


Co-expression Network