AMCG00007894 (LOC106562351,LOC107554933)


Basic Information

Item Value
gene id AMCG00007894
gene name LOC106562351,LOC107554933
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36540583 ~ 36569423 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007894
CGGAGACTGAGACGCGAGAAGCAGGCTTTATTTAAACCGCGGCTTCAGACTCTGAAAACACACCGAAAGTAATTGATCTCAAGGCAAATTTAATCcttacacctttttttttttctgggaacGACCAacagCTTAGCCCAGGATGGCGGCAGACTGGCTGGGGAGTCTGGTGTCGATAAACTGTGGGGTCACTCTGGGTGTGTACCAGGGTGAGGTGTCAGCAGTGGATCAGGCCAGCCAGACCATCTCTCTAAAACAACCGTTCCACAATGGCATCAAGTGCCCAGTGCCTGAAGTCACTTTCAGTGCCATGGACATAAAGGAGCTGAAGATCCTGGAGATCCCTGGCAGCGGTCAAGGGGGGCACCCTGACTTTAGCTCTGTGGGCCACAATGGAAGGAGCGCCAAGGGACCAGTGGTGCCAAGCAGTGCACCCATGGCTGTGCCTCGCAAAGGTGAGCTGAGAGTGCAGGAGGGGTTCAACTCGCCACAACAGTTTTCCAAAAGCTATGGGGAGCGCCACCTCGAGGTGACCAGCCAGGCCAAAGGCTTTCGCCGCCGGCATAACTCCTGTGAGTATCGTCGGTGCACTGCGGGGGGGTGGGAGGCATGCTTAGAGAGGAGGGGGGCGACGCCAAAGAAGAACGGCCTGAAGAACGGGCAGATGAAGACTAAAGATGATGAGTGCTTTGGGGATGGAATGGAGGAGAGCCTGGACACAGACTTTGACTTCGAGGGCAACCTGGCTCTCTTCGACAAGGCCGCCGTCTTCTCGCAGATCGAGATCTCAGAACGTCGGAACGGGGCGCGGTCCCGCGGAACCCCCAACGAGCGCACGCCCTCCCGTTACCGGCACGATGAGAACATCCTGGAGGCCGAGCCAATTATCTACCGGCAAATAACGGTACCTCAGCATGGTGGCAAGGAGTACTGCACAGACTCAGGCCTGGTGGTGCCCAGTGTACcctttgaaatgcacaaaagGCTGATTTCCGTGGCGGAGCGGTATGGACTGAGCCTGGAGCGCAGGCTGGAGATGGCAGGCGTGTGTGCCAGTCAGATGGCACTGACTCTGCTCGGAGGACCCAACAGGCTGACCCCTAAAAATGTCCACCAGCGACCCACCGTGGCCTTGCTGTGTGGCCCTCATGTCCAGGGTGCTCAGGGCATCAGCTGTGGCCGCCATCTGGCCAACCATGAGGTCCACATCATCCTCTTCCTGCCCAATTTTGTCAAGATGCTGGAGTCCATCACAAATGAACTCACGCTCTTTGGCAAGACTGATGGCAAGCAGGTCTCCAGCGTCAAAGATCTGCCGGACAGCCCGGTCGACCTGGTGATAAACTGCCTGGATTGCCATGAGAATGCCTTCCTGCGAGATCAGCAGTGGTACCGGGCAGCTGTGGACTGGGCCAACCAGAACCGGGCCCCCGTGCTGAGCATCGACCCGCCGGTGAGCTCCCGGGAGCTGGCTGTGGAGGCCAAGTGGTCGCTTTGTCTGGGGCTCCCCCTGCCCCTGGCTGAGGGGGCGGGCCGGCTGTATCTGTGTGACATTGGCATCCCGCGCCAAGTCTTCCAGGAAGTGGGCATCAACTACCATTCTCCCTTCGGCTGCAAGTTCGTCATCCCACTCCACAGCACCTAGCATCTGAGTTGACACCGATCGAACTCTTCCCAGAGCCAGGATAGGGAAAGCATCCTTAAAAttgaaggaaaatgttttaaagagcttgaatgttgcattttgtgtgCGGGGTGTTCCCTTGCCTTTGTTGCCAGCTTTCCTGGGGGTGGTGTGCTGGGGAGGGCTTTAAGAAAGCGTTCTGTGggaaagttttttgtttctcctgaACTCTCAGGTTTTGCACTGACATTCCATGAGGTGCAGCCAAAGGACAGTAGATCCTGAAtgattctgtgtgtgtttgagaaggACTGTGTGTTTGGCAGAGTCCATTTACAGTGCATTAAAGCAGGGAAGGTGAGTGAATGAACATTTCcctggagaaagaaagaaaaaaagaaaagagcatTGTTCATGTTGTTCGTGTTGAATTTGAAAATGatctttttgtcattttgtagtTACTGTTGTCACTCTTATGAGATGACAGCGCCTGGCCAAATGAACAGGTCATTGACCCATGTGTCACATTCAGatgtgttcttgtttgtttatcctTAACTGCCAGGTGAGCAAAGGAACGAGAGGTATTTTCACCGCAcagcacaattgtttttttttgttcttctattAAGAATGGAAAATGGAGCATATTGAACGgagtattaaatataaaaagagggCAATCTGTAGTTTGCTTGGGAGCTGAATGTGGTCAGTGCACTCCATACTGGAGTGTGTGACCATCCTGGTGTGGGGTCAGTGTATATTTATGATCCTAAATTTGTTAGTTTCCGAAAATTGGGACTTGCAGACActagtttttatttgtgttttagatTTAAGCTAATGCATCCAATTTTGGGACAGAAGCATTTTACAACCAACAAGGTTTGTTACGGAATTAAACTCGGTCAATGCTCAAAAAATGGTCTGGCGTAAACATTCCCACCGAGAAAAGAATTGCAGCGGGAAACCAATTTCACagacattttggaaaatgtaacattatcattgattgattgaaatagATCgatattttcaattttgtgtACACGTTATCTACAATTGTTTTCACATACCTATTTCTCAATGTTGAAAATGTCTTATGATAAGTACATTGAAAATGACATGGTAAAAAGTATAGACAAATACATGGAGTTTTGTTCAGATTTACTTTACAAAGACCAAGTTAATGATGATACTACAGCCCTAAATATTAAATacccccccaaataaaaacttcatttttttgttctcctGCCCAACATTTTAGTATTGCTTTATTCTTACTGGTATTTCATTTAGTCCTAATTACACAAAGTGTCAATTCTAGTGAAGACCTTAAATTGTAATCTTGGTCAgatatattcacattttaaactgatCAAAGGGgggcatttacattttttctgtgaAGGCATAGTGATTACAACAAAATATTCCATATTACTGTTGAGTCATAGTCTTCAGGTCAGcttttcaattttcttagattttcCTGAATACTGATTCAGGATGTCACAATCTGGACCAAGTGAACACATTATAGTCTCTCATCCCAAATGATCACCCTTTATAGAACATGGTAGATTTAAATCtctaatttcagttttttttacaaatgtaccATTCAAACCATATACATGTTGAATAGATCTAAATGTGTACCAACGTATTGAATTCAGTTTTGTAAGATGAAATTTCAGAATTCTAGCtttcataaatgcatttttaccaTGTTGCGGTGTTCATTTGTTGAAAACAAGGAATTTGTGAACATCAACATCAAAAGGTTGGCTAATTTAAAGTATGGTAAAGTTAGATGCAATTAAAGACCGAAGTCCTGATTTTctgaagttaaaaaatattttttcaaaagttaCTGTGCCATACAATTTTCAAgcctcttattttatttttatttttttgtcatgtttaaCTGGGAAGACTGAGACACATACTAGTTttgacaaaatattttctttgcatttcccCCTCAAAATGGAAATCGTTAGTCTATACTAGTGCCggtgattgttttttgtgtgtcatGTTTGGGGACCAAAGCTCAATGGGGGAGTAAGTGAACACGAGATCCAAATTATGTTTCAATATGAAATGAAGTTGATCTCATTATCCCAGGGCCAGGTATGTTACAGATTGTCACAATCGTGGCTCAAACATGGCTATGTGTTGTTGATCTGGTAATTTGTTTCAGGAAGTCAGTCCTATTTCCTGTTCCTAAAAGgtcaaatgtattgtattgagTGGTTTTAGTGGAATCAATACTTCAATACACTATAGAGTGCTTTACCTTTGTGCAGACGTTAAAAACATTATCAGGTACTTTTACAGTGTGACCATGTCTTTATATATTAGGTTTGTTTTAACTAAAGTTTAATATAGGACTGTAAACTCCACATGAGATCGGCTGGTCTGACATGATGTAGGTTTATTTGCAATTCTATCGGGATCTAGGAGATTTTATAAGAACTTGTTTCTGAAGAAGCCCAATCTTTTCTTCAGTGAAGAGGATGTTTTGTAGCAGTAATCATTTTatatgtgatttttgttttacatggaGATCTTTTGTGTATGTGATTTACGAACTATAAAAACCATGGTTACTCTTCATTCACATTCAATTAGTGGACACAGTAAGCTGGTGGTGGCTTACCCTGCTACTGGTGTACTACAACTCTTGAAATAATCTGTTACCGAATACACTGAGCACACGGGTAATTTTGAAATAAGTCCAATAACTGAATCGGTCAAGTAGTTGACAGTTTAgattaaaccaaaaacaacactggTTCTCCGAGACCAGGCTGTGTTAAGATCCTTTTGCAAATCTTCATTGCTGAATGAAATGTTTAGTTTGTAGAGATTTGAGGAAGATTATCATTCAGAGTTGTGCAGAAACATCAAAGCACATTTTCCCTTACTGCAAAAAATGCCTAAGTGAAAGAAGGCTCAACGTACGGAATGTGACAGTTTATTGtaattacatattgtattgcatgagggaaaaagttattttttcacaaaagtTGACGATCTGCAACTCTGTACAGGTTGCTATTTTCAGTATATGGAGAGCAGGgtttcagtactgtacatgATATTTGcctgaaatatgaatatgctgAATTATGGATTGTCATATTTAACCACAAAACCAAATGAACACCCATAGGCTAGGTTAGACTTTGGTTctcttgtaattgttttattaactcCAAACAGTGTGGGAGTGGGATTGGCTGTAATTTTGTCAGAGGTTATAATGGGTCCATCTGCATCTTTGACTGGTGTGTGTATACTAGATTGAACAGCATCCCATTTCTTCCAAGAAATCCAGTACAGTTCTGTGGGATGACTTAAGAAGGTTTTGGTTCCAGTCCAGatatttttcttgcatttgGAAATATTCATTACAGTCAAGATGTCTTCGTTATTGTGACAAAGTTAGTTTCTTCAGAGGAAGGATGCATCGTCTTTGTCCTGTGCACGCTCTGTCGTGTAGGGATGTACAAGGATGTTTGGTCTCAGGGAGGTTTAGATAATACTGCAGTGCACTGGTTAAATTCTAATTATCttgcaaaacacatttccattcaTAAGCAAAGCTATTTTGTggatatatatttcactttgtaaattatatatattatttgtgctttgcATGTGTGAACTTAGTGAATGAATGGGATTATTGTGCATACTACAATTATGTGAATATTATAGTAGCCACTGCGTTATCCCCTCAGaaattataaagtatatatagaGAAATGGAACAAGCCTCCCTCTAGTAATATAAGATACTTCACAAAGAATGATATGGCCAGCTAGTGCagattgtaatgtaatattttgcacAAATGTATACTGCACACCTTAATCAAACTTATTTTTTGACAAAGACCTGTGTGAGATGCCATCTGCTGGGGGTGACACAGTAGTTCAAGAAGAATAGCATTGAAATAgttgtatgtattgtgtgtgtgtgtgtgtaaatgtgtacagtatatatattcacacattgtgtgtatttttaaaaaaccCAGTTAACTTTCACACTTGCCTAATAGAGATGCAATCCAACTCTTAAACACGGCCCCACGCTTGGCCTTGGGCACTGTGTAAGAACTGACATGCATGATAAAGTGGAAGTCTGATTATTCTGGCATAAAAGTGATGTGGAAAGAGCTTAACAATTCCACTGTGTTATCATTTCATGGCAAGACTCTGTATCTCTTGCCCTATTAGCTCAGCACGCTAATACGCACTGGAAGAATTGTTCTGTGCTTTGTCCAGTTTTGGTTATCGATCgcaattgtacatttttactcTTGAATTTATCTACTTCTGAACTTCTGATTATTTGCCTCCCATTCAAGCTTTTGGTGTAGCTCTGCTTACAAAGTGTGTGAGGACCAGTGTGTCATGGTTTTTGGACACATTGGAGGTGTTTTAGTCCTCTGAGAATCCTAGCTCATGAGCTGCAGTTTCCTTGCTCTGTTTTGATTTACTGTTAGGGTGTTTTTACTCATATCCTAACACTGAAGAGTGGAGAAGTGGAAGTAGaacaatatgtgttttttattgtaattatgtcATTCTTTATGTGCAGCTATCCAAAAGAAGCAGTCTAAACAAAAGTAGTCACGCCCATGTGCAGGGATCAGGGTGAGGGAGTTGTCTTTTAAAATTTAGGAAAATTATGAACCAGATATATTTTGGATCTGATTTGTGTACTGCGGATTTATTAatcttcatatttgttttattctgggCTGCAGTTGTCTTTTCAGGCTTAGTTtcatcttgttttttgtttgttctcttatTCCAAACTTGAACAACAGAATGCTGTCTGCTCtatctggggaaaaaaaaaaacggctaTTGTTCAGTGCATTTTTCTTAGTTGATTATATTTGCCTGTTatggaaataaaaactgttcCTTGAAACTGATCTAGGTGGATCCTCTTTCTTCACTGTGTAGGGAAAGCAATGCCATGTTCCAGTAAACTGCTGTGGTTGCGTTGGGGAACAATAAGAACCTTCCACTCCTGAATAGTGTTTGGTGTAACACACGTGTAACCTAATGATCTGAAGAGGTGTACGCTGTGAATCAGGTGTGTATGTCTGGGGTCATGCGACAGATTTTCCAATGGAAATGCTTTAAATGCTGTGTGATACCTTGTGAATTCATTTCTAAAAAGCCCAGTTAACAGTATAGTGTATTACATTGTGTGGATATTTCTGGGAAATGTTTGACTTTCTCTGGCCGTAACCTTGTGCCTTTGACACAAATCTGCTGCTCAAATAAACATAACAGACATAAACAGTCCTCATAAAGGCAAGAAGAAAACTAGGTTCTGGGACATTAGGGGGGGGGGTATGCtgtttgaatattaaaattatgtattaatattcatGGGGGTTTGACAAGATGTATAACTTGAACTTTCAGGTGCTAATTTTCATTAGGTTGGATTCCAGAACATAAAGGCGGCACTGTCTTTATAAGCttttcgtttttgttttgtgtgaacGGAGTCAATTATACCAATGGCCACAAGATGGCACTGCTAGGCCTTTATTAGTTTGTGTTGTTTAACAGCTGTGCTGCGATCCATGGAGACCACACTGgtgagcttggacagcacactAGGCCAGACTCCAGGCCGATTCCTCAGCTTTGACTCCTTGGCAGCAACAGAAGGATCAGATGTTTCCGGATGAAGCAGGGGTCTGGTTTTGCAATAATTGGCAGGGCTGCTCCACGTTCTCCCGCAGCCTCCAGCTCCCATCTGGCTGAAGATTTCAATCTGTCGGTTGGGGAAGCAGTTCTGTAACTTCAGTTAATTTCATCTGGTCATCAGTgcagctaattaaaaaaatca

Function

NR:

description
PREDICTED: enhancer of mRNA-decapping protein 3-like

GO: NA

KEGG:

id description
K12615 EDC3; enhancer of mRNA-decapping protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007894 True 7544 mRNA 0.42 7 36540583 36569423

Neighbor

gene id symbol gene type direction distance location
AMCG00007895 NA coding upstream 6455 36527365 ~ 36534128 (+)
AMCG00007896 NA coding upstream 51137 36484986 ~ 36489446 (+)
AMCG00007892 NA coding upstream 114802 36404668 ~ 36425781 (+)
AMCG00007888 NA coding upstream 246394 36284983 ~ 36294189 (+)
AMCG00007884 NA coding upstream 520899 36017687 ~ 36019684 (+)
AMCG00007897 csk,LOC107089925,LOC108264088,LOC103138042 coding downstream 53630 36623053 ~ 36644439 (+)
AMCG00007898 csk,LOC107089925,LOC106573028 coding downstream 75486 36644909 ~ 36646509 (+)
AMCG00007899 LOC106587555,LOC106562349 coding downstream 131382 36700805 ~ 36711387 (+)
AMCG00007902 NA coding downstream 148331 36717754 ~ 36718515 (+)
AMCG00007900 tarsl2,LOC106587557 coding downstream 174561 36743984 ~ 36755828 (+)
G27187 NA non-coding upstream 110652 36429406 ~ 36429931 (+)
G27154 NA non-coding upstream 149763 36329420 ~ 36390820 (+)
G27139 NA non-coding upstream 233706 36305974 ~ 36306877 (+)
G27111 NA non-coding upstream 357861 36102296 ~ 36182722 (+)
G27108 NA non-coding upstream 510250 36029458 ~ 36030333 (+)
G27216 NA non-coding downstream 115887 36685310 ~ 36727117 (+)
G27253 NA non-coding downstream 198230 36767653 ~ 36767939 (+)
G27263 NA non-coding downstream 274558 36843981 ~ 36845524 (+)
G27300 NA non-coding downstream 386759 36956182 ~ 36956454 (+)
G27334 NA non-coding downstream 523226 37092649 ~ 37093330 (+)
AMCG00007889 NA other upstream 237742 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 919782 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2745642 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 5100205 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6721031 29755040 ~ 29819552 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 634447 37203870 ~ 37216558 (+)
G27518 NA other downstream 1575561 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1599147 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1786506 38355929 ~ 38423155 (+)
G27551 NA other downstream 1862622 38432045 ~ 38436595 (+)

Expression


Co-expression Network