AMCG00007897 (csk,LOC107089925,LOC108264088,LOC103138042)


Basic Information

Item Value
gene id AMCG00007897
gene name csk,LOC107089925,LOC108264088,LOC103138042
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36623053 ~ 36644439 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007897
ATGTCTGGGATCCAGACAACATGGCCGTCTGGCACAGAATGTGTAGCCAAATACAACTTCCAGGGCACGACAGAGCAGGACCTACCCTTTAGCAAAGGAGACGTCTTAACTATCATCGGTGTAACCAAGGACCCGAACTGGTACAAAGCGAAAAACATTGTTGGGAAAGAAGGCACAATCCCAGCCAACTATGTCCAAAAGAGAGAAGGAGTGAAATCGGGAGGCAAACTAAGTCTCATGCCCTGGTTCCACGGAAAGATCACACGGGAGCAGGCAGAGCGACTCCTCTACCCCCCAGAGACGGGCCTATTCCTGGTGCGCGAGAGCACCAACTACCCCGGTGACTACACGCTGTGTGTGAGCTGCGAGGGCAAAGTAGAGCATTATCGCATCATCTACCACAATGGCAAGCTGACCATCGATGAGGAGGAGTACTTTGAGAACCTCATGCAGCTGGTGGAGCATTACACCAAAGATGCCGACGGCCTGTGTACCCGACTGATCAAGCCAAAACTAATGGAAGGGACCGTCGCTGCACAGGATGAATTTTCCAGAAGCGGATGGGCTCTTAACAGAAAGGAGCTCAAACTCTTACAGAGCATAGGGAAGGGGGAGTTCGGAGATGTAATGGTGGGCGACTACAGGGGGACCAAGGTTGCAGTGAAGTGCATCAAGCATGATGCCACAGCGCAGGCCTTCATCGCAGAGGCGTCCGTTATGACGCAACTCCGACACAATAACCTGGTGCAGCTCCTGGGGGTAATAGTGGAGGAGAAGGGCAGCCTCTACATTGTCACAGAATACATGGCCAAGGGCAGTCTAGTAGATTATCTGCGCTCCAGAGGGCGGACCGTGCTGGGAGGGGACTGCCTACTCAAGTTCTCGCTGTGA

Function

symbol description
csk Predicted to enable non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within convergent extension involved in gastrulation. Orthologous to human CSK (C-terminal Src kinase).

NR:

description
PREDICTED: tyrosine-protein kinase CSK

GO: NA

KEGG:

id description
K05728 CSK; c-src tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007897 True 891 mRNA 0.53 9 36623053 36644439

Neighbor

gene id symbol gene type direction distance location
AMCG00007894 LOC106562351,LOC107554933 coding upstream 53630 36540583 ~ 36569423 (+)
AMCG00007895 NA coding upstream 88925 36527365 ~ 36534128 (+)
AMCG00007896 NA coding upstream 133607 36484986 ~ 36489446 (+)
AMCG00007892 NA coding upstream 197272 36404668 ~ 36425781 (+)
AMCG00007888 NA coding upstream 328864 36284983 ~ 36294189 (+)
AMCG00007898 csk,LOC107089925,LOC106573028 coding downstream 470 36644909 ~ 36646509 (+)
AMCG00007899 LOC106587555,LOC106562349 coding downstream 56366 36700805 ~ 36711387 (+)
AMCG00007902 NA coding downstream 73315 36717754 ~ 36718515 (+)
AMCG00007900 tarsl2,LOC106587557 coding downstream 99545 36743984 ~ 36755828 (+)
AMCG00007905 NA coding downstream 127173 36771612 ~ 36791738 (+)
G27187 NA non-coding upstream 193122 36429406 ~ 36429931 (+)
G27154 NA non-coding upstream 232233 36329420 ~ 36390820 (+)
G27139 NA non-coding upstream 316176 36305974 ~ 36306877 (+)
G27111 NA non-coding upstream 440331 36102296 ~ 36182722 (+)
G27108 NA non-coding upstream 592720 36029458 ~ 36030333 (+)
G27216 NA non-coding downstream 40871 36685310 ~ 36727117 (+)
G27253 NA non-coding downstream 123214 36767653 ~ 36767939 (+)
G27263 NA non-coding downstream 199542 36843981 ~ 36845524 (+)
G27300 NA non-coding downstream 311743 36956182 ~ 36956454 (+)
G27334 NA non-coding downstream 448210 37092649 ~ 37093330 (+)
AMCG00007889 NA other upstream 320212 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1002252 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2828112 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 5182675 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6803501 29755040 ~ 29819552 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 559431 37203870 ~ 37216558 (+)
G27518 NA other downstream 1500545 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1524131 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1711490 38355929 ~ 38423155 (+)
G27551 NA other downstream 1787606 38432045 ~ 38436595 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000166_00089339_00094803 CSK coding CI01000166 null 89339 ~ 95124 (+)