AMCG00007899 (LOC106587555,LOC106562349)


Basic Information

Item Value
gene id AMCG00007899
gene name LOC106587555,LOC106562349
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36700805 ~ 36711387 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007899
ATGGCGTTCATGGTGAAGTCCATGGTCGGCGGACAGCTGAAGAACCTGACCGGGGGTCTGGGTGGCGGGGAGGAGAAACCCGAGGGCGAGAAGTCCGAGGCGGCCGCGGCAGGGATGACCAGGGAGGAGTTTGAAGAGTACCAAAGGCAGCTGGTGGAGGAAAAAATGGAGCGAGATGCTAGTTTTGCACAGAAGAAGGCGGAGAGAGCTACAGTGAGGACTCACTTCCGAGAGAAATACAGACTTCCAAAGAACGAACTTGACGACACTCAGATCCAGTTGGCAGGAGATGACGTTGAGCTGCCCAAGGAGCTGGCCAAAATGATCGAGGAAGacaatgaggaggaggaggagaaggactCAGTCATCGGCCACCTGGCCAACATTCAGAACATGGACCTGGACCAGCTGAAAGGCAAAGCTCAGGCCACACTGGAAGAACTGAAACAGACAGCGGAGAAGTGCAGTATCATGTGA

Function

NR:

description
PREDICTED: complexin-3-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15295 CPLX3_4; complexin-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007899 True 477 mRNA 0.55 3 36700805 36711387

Neighbor

gene id symbol gene type direction distance location
AMCG00007898 csk,LOC107089925,LOC106573028 coding upstream 54296 36644909 ~ 36646509 (+)
AMCG00007897 csk,LOC107089925,LOC108264088,LOC103138042 coding upstream 56366 36623053 ~ 36644439 (+)
AMCG00007894 LOC106562351,LOC107554933 coding upstream 131382 36540583 ~ 36569423 (+)
AMCG00007895 NA coding upstream 166677 36527365 ~ 36534128 (+)
AMCG00007896 NA coding upstream 211359 36484986 ~ 36489446 (+)
AMCG00007902 NA coding downstream 6367 36717754 ~ 36718515 (+)
AMCG00007900 tarsl2,LOC106587557 coding downstream 32597 36743984 ~ 36755828 (+)
AMCG00007905 NA coding downstream 60225 36771612 ~ 36791738 (+)
AMCG00007903 mmp24,LOC107723920,LOC107666082,LOC107587563,LOC107696473 coding downstream 104263 36815650 ~ 36841835 (+)
AMCG00007906 eif6,if6,LOC107723919 coding downstream 136167 36847554 ~ 36855323 (+)
G27187 NA non-coding upstream 270874 36429406 ~ 36429931 (+)
G27154 NA non-coding upstream 309985 36329420 ~ 36390820 (+)
G27139 NA non-coding upstream 393928 36305974 ~ 36306877 (+)
G27111 NA non-coding upstream 518083 36102296 ~ 36182722 (+)
G27108 NA non-coding upstream 670472 36029458 ~ 36030333 (+)
G27253 NA non-coding downstream 56266 36767653 ~ 36767939 (+)
G27263 NA non-coding downstream 132594 36843981 ~ 36845524 (+)
G27300 NA non-coding downstream 244795 36956182 ~ 36956454 (+)
G27334 NA non-coding downstream 381262 37092649 ~ 37093330 (+)
G27400 blcap,bc10 non-coding downstream 783772 37495159 ~ 37499385 (+)
AMCG00007889 NA other upstream 397964 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1080004 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2905864 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 5260427 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6881253 29755040 ~ 29819552 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 492483 37203870 ~ 37216558 (+)
G27518 NA other downstream 1433597 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1457183 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1644542 38355929 ~ 38423155 (+)
G27551 NA other downstream 1720658 38432045 ~ 38436595 (+)

Expression


Co-expression Network