AMCG00007907


Basic Information

Item Value
gene id AMCG00007907
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36842475 ~ 36846583 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007907
GGCGGAGGAGCGTCACCGCGGCGGCGGATCTGCCTGGAAACACGGCGGCGGTGCGGGCGGAGGGGCTGGCAGGGAGGCGCCGACACGACACCACACTGGCAGTGCAGTCTTGCTGATGGGGGGAGGCCAGAGCTGTGAGAGGAGTGCAGCGCCAGAGGACATCACAGTGACACCACAGGCCTCCGCAGTCCTCACAGAGCCCCCCTCAAACACCGTCGTGGCAGAGACCGCTCGGGGGCCGACAGCAGAGACCCCTCAGGGGCAGAGGACAGAGCTGCCTCAGTGCCGCATGGGTAGTAAGAGAGTGGACGACATGTGCTTTATGATCACCTGCACAAACTGGTACTGAACAAGACAGCCTGTCTCTAAATGAACAGCATGCCGAGGCCACCTTCAAGGGATTCAAATTCAAGCAATGCAGCAACTGACATTATGATCAGTAGTTTTCATTAGACAGGTCTTGCTTCCTTACTAGTCCCTTAAAAATATTCTTCAAGGACAATGTGCAGGTTCCTCCTGCATTACAGGATTCCCTTCCCTGAAAGCAGTTGTTTGACTTTTAAGATGATttaattgttcattgttttcaattagtcaaatgtaatatatcgtatttaaaaacaacaacaaaattgcaatttaattaaaatatataagaaattaaatatgctatttattttctaggttttgacaaagcaaaaatatgtacaaaggACATTGTAGCTTTGATATATGTGCGCTCTTTCATGTTTCAAAATGGCTCAAATACAGAATTATAAATTGACATGTAAATTAACTGTATAACTGTATCTCTTTTGCTACTGCTTTCTCTTCAACTAGCAGGTTTAGTATAACCCTCAGTGCAGCCCCTGCCTTTAGTAGTTAAGGCTTTGCCTGCACACATACCTTGagaatgtttatttctttaagacATTTTTATAGAAACACATTCCCTaataaattcaatatatttgttgGGATTTTTAGTTAATTAAGCAGTGGTACATTTCAGTGAAGGGATGTCATGCTCTCAAATCCACATTCAGATCCCTGATTTCAGAATTTGCATTTACCTTAGCATGTTAGTGtcatgtttgcattttgttctattcaaaacatcatccatacatgATCCAAAAGTAACCTATTTCAACATTAGTGTTGGTTTTTGAATAACACAAGAACATGTGTGCATTAGGTACTACATAACAGATGATAATATCAACACTCTTcatgttccttttttattgacaaatttgtttgaaatacaaCACGGTGAGATATTCTTAGATACAGTGTGgaattattaaagaaaataataaaataaagcaataccTTGCTCCAGTCAATGTGGTTAacaattcaaaaagaaaaataacttgtcTTATAAATGTTGGAACTTTCTTTTATCATGAATGAGGTAAGACttctttatttataacaaaGGCCGTAAGAAGAACAATGCAGTgctgaattaaaaatgcataagcaacagtaataaaaaaggTGGTAATTTCCCAATGATAGTGGTTTATGATGGGTTTatttacatgttgttttttttccagttttgtgaAGGGGACATTAAGTGTCTTTATATTTGTTCCTGGGCTGGGTGGATAGCCTGTCTCAGTCCAGCATGCCTCAGCACCTGCACTGTGCAAACAGAGACGGGCTCTGGACGTCCAGGAACATGGCATACAGGGGCAGTAAGGCGTGAGGGAGCGGGACGAGCCAGCCTCACACTGAGGGTCCCGTTCCCACAGTGGGCTTTCAGCACGGAGCATGGGGGCCGACACCACTGCAACACGGAAGCTGAGGTCTCCTAATCACAAAGGATGAGgatgttttttcaaattttctGCTAGCATATTAGACTGAATCAGAGCATGGGTACTTTGTTGGGTTTCACAATTCTTGAAGAAccattttttgttggtttgttttcaattcttattttgtatttcacatgcAACTCAAGTACGAGAGTATCAAGTATTAACTTCTGTTGCTTCAGTGCAGTGGAGATTAAAGACATGCTTTGGAAGCCAATAGAATtttgacaaatgtattattttgatacagatttaactgaaataaataaataaatacataacaataatatacagGACCAGTTTGGTGTATttagttaaatgtttagttatATTTAGTTGCAAAAATCTCCCATCCCCATCCTTTCATcataagaaaatgttaaaacaaccaaaacagtAAACATTTGCACATTGCAAAACCCTGTATTGTGCATTTATTCCACTATTTTCTGTCAGAAATTGTATGGACcagtcaaataataataataaaatacattaaatcaacattttccaaagagtaatttaaattagttttacaaaaactgtatatttacGTTTTAATGGGAAATCGTAATAGATTAGTCATGGTATCTTTGAGAGTAAAAATTTAAAACTAGATTTTTCTTACTGTAAAAGAAACAGTAATTATCATAAGCAAAAGCAGTTGTTCTTTAACTAACAAcctctttaaaatatttctagTTAAAATCCTTTTCAGTTGTTCTTGAAAtccatttgattaaaaacaagatGAACAATGTATTTACCGTTCATTATTCATAAagctttccatttaaaaaattggCTTGTTCAGTATCTAAAGTATATCATATACTACTGCTTATTAGGTTTTGTACTTTTGatatgttctgttctgttcattttccattaataaaaagtacaatgaaaaccaaaagGCAACAACAGGCTATTTTAAAGGCGACTGTTCTTCTGTCCAGATAGTGCTGAAACGCGCACACAGAAATCTCTCGAGGAAGCTCAAAGATGATTTAACTTTCATCCCCTGGGTCATTTTGTCTGAAGAACACCGTCTGTGACTGAGGAaagaaggggggagggggatatTCATACAGAATTTGCCATGCATCTCATTTATAAACATCCTTTCAGTTCAAATCATTTTGACAAATCTGATGTTGCTAAATAGTTGTGACATTGCCATTCAAATACATCTTGCACTACatagtatttgtattgattaGTCCAACAAATATCGGTTTCTGCTcaccatgtttaaaataaacatggagAGAAATGGCCAgaattgatacattttatttaaatagtaagATTTAGCAgttaaat
>TU34133
ACGGGCTCTGGACGTCCAGGAACATGGCATACAGGGGCAGTAAGGCGTGAGGGAGCGGGACGAGCCAGCCTCACACTGAGGGTCCCGTTCCCACAGTGGGCTTTCAGCACGGAGCATGGGGGCCGACACCACTGCAACACGGAAGCTGAGGTCTCCTAATCACAAAGGATGAGgatgttttttcaaattttctGCTAGCATATTAGACTGAATCAGAGCATGGGTACTTTGTTGGGTTTCACAATTCTTGAAGAAccattttttgttggtttgttttcaattcttattttgtatttcacatgcAACTCAAGTACGAGAGTATCAAGTATTAACTTCTGTTGCTTCAGTGCAGTGGAGATTAAAGACATGCTTTGGAAGCCAATAGAATtttgacaaatgtattattttgatacagatttaactgaaataaataaataaatacataacaataatatacagGACCAGTTTGGTGTATttagttaaatgtttagttatATTTAGTTGCAAAAATCTCCCATCCCCATCCTTTCATcataagaaaatgttaaaacaaccaaaacagtAAACATTTGCACATTGCAAAACCCTGTATTGTGCATTTATTCCACTATTTTCTGTCAGAAATTGTATGGACca

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007907 True 3161 mRNA 0.37 2 36842475 36846583
TU34133 False 636 lncRNA 0.39 1 36843330 36843965

Neighbor

gene id symbol gene type direction distance location
AMCG00007901 LOC107712968 coding downstream 99006 36730321 ~ 36743469 (-)
AMCG00007893 NA coding downstream 377040 36431147 ~ 36465435 (-)
AMCG00007890 LOC108439026 coding downstream 528332 36307564 ~ 36314143 (-)
AMCG00007891 NA coding downstream 536103 36304406 ~ 36306372 (-)
AMCG00007887 NA coding downstream 574669 36179909 ~ 36267806 (-)
AMCG00007908 NA coding upstream 23548 36870131 ~ 36879680 (-)
AMCG00007911 LOC103464266,LOC105008435,LOC107595422,LOC107087943,LOC107666149,LOC108272058 coding upstream 38797 36885380 ~ 36900670 (-)
AMCG00007910 gdf5 coding upstream 90244 36936827 ~ 36941868 (-)
AMCG00007915 NA coding upstream 142080 36988663 ~ 36992974 (-)
AMCG00007916 NA coding upstream 166721 37013304 ~ 37023811 (-)
G27254 NA non-coding downstream 74536 36767653 ~ 36767939 (-)
G27252 NA non-coding downstream 81886 36760345 ~ 36760589 (-)
G27243 NA non-coding downstream 96609 36744068 ~ 36745866 (-)
G27197 NA non-coding downstream 350629 36491196 ~ 36491846 (-)
G27196 NA non-coding downstream 374023 36468086 ~ 36468452 (-)
G27302 NA non-coding upstream 120544 36967127 ~ 36969756 (-)
G27335 NA non-coding upstream 246066 37092649 ~ 37093300 (-)
G27435 NA non-coding upstream 720186 37566769 ~ 37566983 (-)
G27436 LOC107666014 non-coding upstream 720620 37567203 ~ 37567566 (-)
G27438 NA non-coding upstream 723676 37570259 ~ 37570881 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 831480 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 1972668 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 5026324 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 5499683 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 5595826 31192010 ~ 31246649 (-)
AMCG00007929 NA other upstream 393501 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 648328 37494911 ~ 37499392 (-)
G27437 NA other upstream 721034 37567617 ~ 37569284 (-)
G27439 NA other upstream 724374 37570957 ~ 37571488 (-)
G27442 chd6 other upstream 726451 37573034 ~ 37588525 (-)

Expression


Co-expression Network