AMCG00007909


Basic Information

Item Value
gene id AMCG00007909
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36956659 ~ 36969735 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007909
TTCAATTCCGCGGTGGAGTACAAGTGTTAACGGTAACCGTTCATAACAATACTGTCGTGAAGTACTAGCAGACGGCGAAACCCATAACGGCGAACAGAAAGCGGCCTGTCGGGGATACCTGCCCATCTTTGAGTCTTTATTGTCTGCTGTGAAGAAGAGCGAGATGCAGACGCCGTGCCTGTTCGTGCTGTTGCTGGTGGTCTGCGCACACGCCGAGTCGCAGGTGAGGGAAACGGAGACCTGGGTGCCCTCAGATCAGCAGGACGAGCAGCTGGAGGGCATGTCTTCCGGAGCCTCTCCCAACAGTTCTGACTTTGGCTTCCAGGGCGAGGAGGACATGGACACCTTTGATGCCGAAgacgacgatgatgatgatgacgatgactACTATGAATACTCTGGCTCTGGAGatTCACCTGCCACCACAGAAGACATCCTCCTAACCACGCAGGACATTGACAACCGTATCCCCGACCAGGACCCCACCCAGAGGTCCAAGAAGCCCCTGGACGAGAACGAGATTGTGCAGAAGAACGAGGTCGGGGTGCTGCGGAATGAACAGGAGGAGGTCGAGACCAATGTGCTGATGGCCCACGCGAGCGAGGAGAGCATCTTCAACAAGACCGAGGTCCTTGCAGctctgaTCGCCGGAGGAGCGGTGGGTCTGCTGTTTGCCATCCTGCTCATCCTGCTGCTCATCTATCGCATGAAGAAGAAGGACGAAGGCAGCTATGACCTGGGCAAGAAGCCCATCTACAAGAAGGCGCCTACCACAGAGATCTACGCATAGGGCCCCGCAGACTTTCAATGGTGCCTCTGAAACCAAAAACTCTGCTACTTCCATGCCTAAGCAACATTTGTCAGTCAGCCTGCATTTCACATCCAGGAAAAAGAGACTGGAACAAAACACtttggagtttttattttttatttttttgtgaaactAAAGTGACCTAAAAGTTTGTTCATGCGACGACCTCCACTGGACTGATTGAGTTGCCAAATCCAGGGTGGTTGTTCCCGCTGTGCATCGCCGGAGGGTGTGGAGCATTGCCACTGTGCCCCCCCCCTTGCTGTGTCCCCTACGCTAACTCGCTCTCGACACTACATGATGCAATCCAATCTTGCTGGAGGAGAAATACGGTACTGATTCGTAGACCAAACGCTGGCACTCACTCCCCCACGCAGTGCAGTACAAATGTGATTGCAGGCTTCAGTCTTGGTGCTACCGAAGGCCTAGCATTGCCACCCCTGTTCAATGGTACATGCCTTCAGGTGTAGGTGAACGCTCCCTTTAAATCAACCCCATTCCAGTTACTCTAAAGCGCTCCCCTCGCTCACTCTtaccaaatatttaaatgccaaaattatgcttttaacattggtttgtttcagttttcaaacTGAATTCCTCTAAAACTCTGTACATGAAGGGAGATCCCCTTCATTGTATTTTACTACAAATGCTAGTTGCCAGTAAAAAGtttcttattgttttgtttaactggGTTTGTAGAAATTtccagatttttgtttttaattattattaatttaactcaaatattttattgcctttttttcAGGTTGGGACTTTTTCCCTTTCTAAACTGTTGTATATGTGTTAAATTTTATATCCTGTAGTTtgagatttttaattttcataaaacaaattagttttataACAGGTTTTATATTGTAAGAGTTTCTATATTTCTGTTAGACATTGTaagcagtatatatttatattttgtagaaggaataaaactattaaacttCGGGGCTACTTCTGAAATCAGCCGTGTGACTCACACAGGCAACAGTCTGCTGCTCTTTGCCACGAGGAAAAGGTGTCTAATCACTTTCCTGCTATGGTGAAGTTAGAGAATCCTCAATTTCAATATTCAGGATTTGGTTActttggggagaaaaaaaaaaaaaaaaaaactatttttgtgtttaaaaaaaaataaataaaatctgttcaaTCTGGTTAACCCTTTCCGTACAGAAGCTGCTGTTTTCGATTTTGTGAAGCTCTTGCAGCACAAGCTCAGCGTTGCGTTTTGATcttgtgatttatatttattcagttttgttttcccttaatGAAATTGCAGTTGATAAGCTATAGAATTTAAGGTCTGTCTTCCTTACCAGCGGCGTTCTTCACGGCGGTGGCTGCGACCGCACTCTGATCAAATCCTGAACGGTACACTGCAGCCACTGTCGCGAGACGCAATGTCGGTGCCAAGCAAAACGGCTTACTGTTTATCCCAACTTTCCTATTTGGTGTGGGGAGGATAACATTTTCCAATTGCTTTGACCTAAAAAGGTTAAATTTACTGAACCTAATATACAAAAGAATCTTAACCATCCTCCTGTCCCCTCCCATCTTCCCTCGCCAAATTTGTTTTTAGGATGCATAAGATTCTATATCAAATTCACCTGTAACAATCCTTGCCATCAAACCAAACCTGGTGATTTAAAAACCTTTACTGATTTGGGAAGCAGAGTGTCCCTTGGGAACCTGCTCTACATTCCTCTACAGTGGTACTGAACACTTCCTCTGTATTCAACACCCACATCCTGTCACTACAGTGCTATGTTCAGGAAGCTGCTAACTATGCGTGGCCCTGAACTCTTAATGGCACTGGATATGGAGATTATGGCAAGAGGGGTTTGAGGATTGTGCTGCCCTTTTAACGAAGGGTGCATCTCGCACTGCCAGCTTCGCAAACTTGCTGCTGTCCGGGGTTCCCATTGGTGTAGCTGAAGACTGCAGGCAGGTGCTGAAAATATcagctttttttgtgtggagctACAAGCTGGGCCATATCTGCACAGCTGGCCCGTCCATTTCAACAGTCCTAATCCAGAGACGTTTTGGTGATATGGGGATTATCTTTCCTCTCGTACAACAGACAAGTCTTCACAGTCTTTAAATTATCTAAAGAGGGGCTCTATAAACCACACTAAGTCAGTGAGTGGCaaggttattttgtttattctgtcCTTTTATGTTTAGTTTGAAAATGTCAATACAGCTGTGCGTTTTGCTCCAACAGAACGTGCGGTTTAACTCTTAAACCCCCTGTtgttgtaaatacttctgttctGCAGTCCTGAGACATGAggaggattattatttttttatgctgaTTTGCTGAGTGGTTTGGCTTTTCTGACCATTGACAGTTCTGTACATACTGAATTTATATTGTCCTgttactgaattaattaaaaaagg

Function

GO: NA

KEGG:

id description
K16338 SDC4; syndecan 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007909 True 3247 mRNA 0.44 5 36956659 36969735

Neighbor

gene id symbol gene type direction distance location
AMCG00007912 NA coding upstream 17061 36929053 ~ 36939598 (+)
AMCG00007904 NA coding upstream 91177 36855628 ~ 36865482 (+)
AMCG00007906 eif6,if6,LOC107723919 coding upstream 101336 36847554 ~ 36855323 (+)
AMCG00007903 mmp24,LOC107723920,LOC107666082,LOC107587563,LOC107696473 coding upstream 114824 36815650 ~ 36841835 (+)
AMCG00007905 NA coding upstream 164921 36771612 ~ 36791738 (+)
AMCG00007914 NA coding downstream 53677 37023412 ~ 37034789 (+)
AMCG00007917 NA coding downstream 70747 37040482 ~ 37052197 (+)
AMCG00007913 NA coding downstream 87101 37056836 ~ 37071433 (+)
AMCG00007918 NA coding downstream 115365 37085100 ~ 37086014 (+)
AMCG00007921 NA coding downstream 128191 37097926 ~ 37098855 (+)
G27300 NA non-coding upstream 205 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 111135 36843981 ~ 36845524 (+)
G27253 NA non-coding upstream 188720 36767653 ~ 36767939 (+)
G27216 NA non-coding upstream 229542 36685310 ~ 36727117 (+)
G27187 NA non-coding upstream 526728 36429406 ~ 36429931 (+)
G27334 NA non-coding downstream 122914 37092649 ~ 37093330 (+)
G27400 blcap,bc10 non-coding downstream 525424 37495159 ~ 37499385 (+)
G27462 NA non-coding downstream 807330 37777065 ~ 37777462 (+)
G27489 NA non-coding downstream 1047133 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 1057645 38027380 ~ 38027923 (+)
AMCG00007889 NA other upstream 653818 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1335858 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 3161718 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 5516281 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 7137107 29755040 ~ 29819552 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 234135 37203870 ~ 37216558 (+)
G27518 NA other downstream 1175249 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1198835 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1386194 38355929 ~ 38423155 (+)
G27551 NA other downstream 1462310 38432045 ~ 38436595 (+)

Expression


Co-expression Network