AMCG00007910 (gdf5)


Basic Information

Item Value
gene id AMCG00007910
gene name gdf5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36936827 ~ 36941868 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007910
ATGAAATTACCAAAACGACTCCCTCTTTTATTGGGGTGCTGGACTCTGTTCTACCTGGATTTCATCCCAGCAGCTTCGAGCAATACAGGGACCGCACACAGCGCATCAGTAAGCAGGGTGGAGGGTCGCAGGGGCGGTGGGAGCGAGGGAGCCCAGCTGCCCAGGGCCGGCGGGGCAGTCAAACTGATGGTGGGCAGTAATGGTGCCGGGACGCGAGCACCCACCAACGGAGCTCGGATCACTCGCATCAGGACGGGACCCCCGCTGATCAAGGGCGAGCCGGTCCAGGCGAAACCCGCGACAGCAGTGGCGGAGCACAGCGTCGCGGGCAGCACTAGAGGGGGTATCAATCTGGGCAGGAAGGAGGCAGCGCGCTCCTGGGTGCCCGGGGATGGTGCCAGGGCGGTCGCTGCGGCCCCGAGAGCCCTAACCGCGCAGACTGGCACCAAAGCGAGGGCAGCTCCCAAAACTGTGCCAGCCAGGACCGAGCAGCACAAGGCTGCGAGCCGCACGCAGGGCGCCGGGCTGGGGCAGAGGAGCGCTAAACCTGCGGCGGGCAAGCCTGTGGGTGACAGGGACTCCTCCAAACACCCGCTGGTGACGCCGCACGATTACATGCTGTCCCTCTACTGGACACTGTCCACCGGGGAGGTCAACAGCAGCGCGATGCATGAGGCTGGGATGGCCAACACAATCACCAGCTTCGTGGACAAAGGCCAAGATGAGCGCCTCCCACTGCTGAGGAGGCAAAAGTACAACTTCAACATCAGCGCACTGGAGAAGGAGGGTCTGCTGGGCACCGAGCTTCGCATCCTGAGGAAGCGGCCAACTGACCCACGCAAGGCTCGCTCTGCCGGGGGGGCCATCACCCTGAAACTGCTGACCTGCCCCACAGGTAAGCAGAAGGCCACGCTCCTGCACTCCCGCTCCATCGATGACCAGGACACGCCCAAATGGGAGGTGTTCGACATCTGGAAACTGTTCAAGAATTTCAGGAACTCGACCCAGCTGTGCTTTGAGCTGGAGGCCTCAGACAGGGGGCGACTGGTGGACCTGCGGAGCCTGGGGTTCAGCCGCCTGGGCCGACAGACCAAGGAGAAGGCTTTCTTCCTGGTGTTCAGCAGGACCAAAAAGCGGGACTTGTTCTACAACGAGATCAAAGCCAGGTCCGGCCACGACAATAAGACAGTGTACGAGTACCTGTTCACCCAGAGGAGGATGAGGCGGGCACCTACATCCCGCACCAAGAAACCACCCAAGAACGCCAAGCCCCGCTGCAACCGCAAGCCCCTGCATGTCAACTTCAAGGAGATGGGCTGGGACGACTGGATTATCGCACCCCTGGAGTATGAGGCCTATCACTGCGACGGCGCATGTGACTTCCCCATCCGATCCCACCTGGAGCCCACCAACCATGCCATCATTCAGACTCTCATGAACTCTATGGACCCTGACTCCACCCCGCCCACCTGCTGTGTCCCCACCAGACTGAGCCCCATTAGCATCCTGTACATTGACTCTGCCAACAACGTGGTCTACAAACAGTATGAGGACATGGTGGTGGAGTCTTGTGGCTGCAGGTAG

Function

symbol description
gdf5 Predicted to enable cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in perichondrium; pharynx; and skeletal system. Human ortholog(s) of this gene implicated in Parkinson's disease and bone disease (multiple). Orthologous to human GDF5 (growth differentiation factor 5).

NR:

description
PREDICTED: growth/differentiation factor 5

GO: NA

KEGG:

id description
K04664 GDF5; growth differentiation factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007910 True 1584 mRNA 0.61 2 36936827 36941868

Neighbor

gene id symbol gene type direction distance location
AMCG00007911 LOC103464266,LOC105008435,LOC107595422,LOC107087943,LOC107666149,LOC108272058 coding downstream 36157 36885380 ~ 36900670 (-)
AMCG00007908 NA coding downstream 57147 36870131 ~ 36879680 (-)
AMCG00007901 LOC107712968 coding downstream 193358 36730321 ~ 36743469 (-)
AMCG00007893 NA coding downstream 471392 36431147 ~ 36465435 (-)
AMCG00007890 LOC108439026 coding downstream 622684 36307564 ~ 36314143 (-)
AMCG00007915 NA coding upstream 46795 36988663 ~ 36992974 (-)
AMCG00007916 NA coding upstream 71436 37013304 ~ 37023811 (-)
AMCG00007920 NA coding upstream 196359 37138227 ~ 37141287 (-)
AMCG00007926 stk4,LOC103371188,LOC108435692 coding upstream 275902 37217770 ~ 37238928 (-)
AMCG00007928 LOC105008385,LOC108414618,LOC106566651,LOC107702880 coding upstream 306511 37248379 ~ 37259255 (-)
G27254 NA non-coding downstream 168888 36767653 ~ 36767939 (-)
G27252 NA non-coding downstream 176238 36760345 ~ 36760589 (-)
G27243 NA non-coding downstream 190961 36744068 ~ 36745866 (-)
G27197 NA non-coding downstream 444981 36491196 ~ 36491846 (-)
G27196 NA non-coding downstream 468375 36468086 ~ 36468452 (-)
G27302 NA non-coding upstream 25259 36967127 ~ 36969756 (-)
G27335 NA non-coding upstream 150781 37092649 ~ 37093300 (-)
G27435 NA non-coding upstream 624901 37566769 ~ 37566983 (-)
G27436 LOC107666014 non-coding upstream 625335 37567203 ~ 37567566 (-)
G27438 NA non-coding upstream 628391 37570259 ~ 37570881 (-)
AMCG00007907 NA other downstream 90244 36842475 ~ 36846583 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 925832 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 2067020 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 5120676 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 5594035 31338716 ~ 31342792 (-)
AMCG00007929 NA other upstream 298216 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 553043 37494911 ~ 37499392 (-)
G27437 NA other upstream 625749 37567617 ~ 37569284 (-)
G27439 NA other upstream 629089 37570957 ~ 37571488 (-)
G27442 chd6 other upstream 631166 37573034 ~ 37588525 (-)

Expression


Co-expression Network