AMCG00007914


Basic Information

Item Value
gene id AMCG00007914
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37023412 ~ 37034789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007914
CCGCCGTTTCACAAGGGGAGGGGTCTGAGCCTTTAACCCTCTTTCCCTGAATTAATACCTGCAGCACAACGTCTCAGTCCACTCCACTGCTCCGTGACGCTAAAGAGCATCCACAAGCTCCTTTGACcaaaaaggacatttttatattatagtctgtttaaataaaatacaacaaacaagaaCGGTGTAGATATAATCCAACTAAAGTGTACATATTCGTCTGGTATAGTAGGGATTTGTTCATTGCTGACCCTTGCCTGGGATATTGGACTGTGCGGAGGTGTCGTGTCGGTGTGCAGCTCTCAGGTTACCTGTCCCAGCCGGCCCGGCGCGGCCCGTCGTGCAGCAGCGCGCCCAGTGAAGCTCAGCCTGTCCAGCACCAGTCCAGTCCTGACTCCAGCCCCAGCACCCAGGATGAAGCTGCTGCTAACGTGTACATCCATGCTCCTCACACTGGTCATTCACCTGGAGGCCAGGCCACAGGAAGCATTGCAGAAATGCAAGATGGGACCAATCGACCTGGTGTTCATCATTGACAGTTCCCGCAGCGTGCGCCCCTTCGAGTTTGAGACGATGCGGAAGTTCATGATTGATATCATCCACACACTGGACGTGGGCGCCAATGCTACGCGGGTGGGCGTGGTGCAGTACTCCAGCCAGGTGCAGAACGTCTTCTCCCTGCGCAGTTTCACACGCAAGGCGGACATGGTGAAGGCCATCAATGAGATCATCCCGCTGGCCCAGGGCACCATGACGGGCCTGGCCATCCAGTACGCCATGAACGTGGCATTCTCAGGGCAGGAGGGTGCACGGCGTGGCGTGCCCAGTGTGGCGGTGATTGTGACGGACGGACGGCCACAGGATCGTGTAGCCGAGGTGGCACAGCAAGCACGGGAAAAGGGCATTGAGATCTACGCAGTGGGTGTTGCCCGCGCGGACATGTCCTCGCTGCGTGCCATGGCCTCACCTGAGTTTGAGGAGCACGTCTTCCTGGTCGAGTCTTTTGACCTCATTCACCAGTTTGGCCTGCAGTTCAAGGACAAGCTGTGTGGGCTGGACATGTGCACTGAGATGGACCACGGCtgtcagcatgtgtgtgtgagtgagaccAGATCATACCACTGCGAGTGCCACGCGGGGTATACACTCAACGCAGATGGCAAGACATGCTCTGcTATCAACCTGTGTGCGCAGGGGAATCACAACTGCGAGCATATCTGCGACAATTCCCTGGGCTCCTACACCTGCCGCTGCCGGGCTGGGTATTACCTGAACCAGGACAAGCACACGTGCACAAtgaTCGACTACTGTTCGTTTGGGAATCACAGCTGTCAGcatgagtgtgtcagtgtgctgaaCGGCTATTTGTGCCGCTGTAATGATGGATTCACTATCCAGGATGATGGGAAGACCTGCAAGTCGGACGACATGTGTAACTCTGTGGAGCACGGATGTGAGTTCCGCTGTGTCAGCACCCCTGGCTCCTACTACTGCGTCTGTCCCGAGGGCCAGCTTCTGCAGCAGGATGGCAAGAGCTGTAGCAccTGCAGGACAGCCATTATCGACCTGGTGCTGGTGATCGATGGGTCCAAGAGCGTGCGTCCACAGAACTTTGAGCTGGTGAAGCAGTTTGTGAACCAGGTGGTGGACACCCTGGACGTGTCAGCCAACGGCACACGAGTGGGACTTGTGCAGTACTCCAGCCGCGTGCGCACCGAATTCACACTCAACCAGTACCACAGCGCTGATGCCATCAAAGCTGCCGTGCTGAAGGTGGACTACATGGAGAAGGGCACCATGACCGGCCTGGCACTCAAACACCTGGTGGAGAACAGCTTCTCCGAGGCTGAGGGTGCCCGGCCACCCGCACGCCACATCCCACGTGTCGGCCTGGTGTTCACTGATGGGCGCTCCCAGGACGACATCTCCGAATGGGCCAAGAAGGCCAAGGAAGCAGataTCACAATGTACGCAGTGGGTGTTGGCAAGGCCgtggaggaggagctgcaggaAATCGCATCAGACCCGGTAGACAAACACTTCTTCTACAGCGCAGACTTCACTGCCATCAACCAGATCGCAGAGAATCTCAAACTCAACATCTGTGCAGAGGAGAGCCTGGGGGAGATAGAGGTAAAGGACCCGTGCGCCTGTGAGACCCTGGTGGAGTTCCAGCAGAGCACCATGAGCACCCTGGAGCAGCTGACACAGAAACATATCCTTTTTCACTGA

Function

GO: NA

KEGG:

id description
K19467 MATN; matrilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007914 True 2232 mRNA 0.56 10 37023412 37034789

Neighbor

gene id symbol gene type direction distance location
AMCG00007909 NA coding upstream 53677 36956659 ~ 36969735 (+)
AMCG00007912 NA coding upstream 83814 36929053 ~ 36939598 (+)
AMCG00007904 NA coding upstream 157930 36855628 ~ 36865482 (+)
AMCG00007906 eif6,if6,LOC107723919 coding upstream 168089 36847554 ~ 36855323 (+)
AMCG00007903 mmp24,LOC107723920,LOC107666082,LOC107587563,LOC107696473 coding upstream 181577 36815650 ~ 36841835 (+)
AMCG00007917 NA coding downstream 5693 37040482 ~ 37052197 (+)
AMCG00007913 NA coding downstream 22047 37056836 ~ 37071433 (+)
AMCG00007918 NA coding downstream 50311 37085100 ~ 37086014 (+)
AMCG00007921 NA coding downstream 63137 37097926 ~ 37098855 (+)
AMCG00007919 NA coding downstream 78842 37113631 ~ 37117196 (+)
G27300 NA non-coding upstream 66958 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 177888 36843981 ~ 36845524 (+)
G27253 NA non-coding upstream 255473 36767653 ~ 36767939 (+)
G27216 NA non-coding upstream 296295 36685310 ~ 36727117 (+)
G27187 NA non-coding upstream 593481 36429406 ~ 36429931 (+)
G27334 NA non-coding downstream 57860 37092649 ~ 37093330 (+)
G27400 blcap,bc10 non-coding downstream 460370 37495159 ~ 37499385 (+)
G27462 NA non-coding downstream 742276 37777065 ~ 37777462 (+)
G27489 NA non-coding downstream 982079 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 992591 38027380 ~ 38027923 (+)
AMCG00007889 NA other upstream 720571 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1402611 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 3228471 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 5583034 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 7203860 29755040 ~ 29819552 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 169081 37203870 ~ 37216558 (+)
G27518 NA other downstream 1110195 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1133781 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1321140 38355929 ~ 38423155 (+)
G27551 NA other downstream 1397256 38432045 ~ 38436595 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032380 matn4 coding NC_007117.7 CM002890.2 52790049 ~ 52846194 (+)