AMCG00007923 (LOC105031092,LOC105901836,LOC102299656,LOC101482251)



Basic Information


Item Value
gene id AMCG00007923
gene name LOC105031092,LOC105901836,LOC102299656,LOC101482251
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37203870 ~ 37216558 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00007923
CTGCAAACGACCCGAGCAGAGATCAGTGGAGAAGAGCAGCACCCAGTCCCAGCTGGCGTGGCCTGAGCGGCAGGGTGTGAGCGGTGCTGGATGACACAGGGATGGTGAACGAGACGCCACTGCCCTGGGAGCCGGGGACGGAAGACACCCAGGTGCGGGTGAACGTGGGCGGGCTGAAGAGGAGCTTGTGCTGCAGCACACTGCGCCGCTTCCCCGACACACGACTGGGCCGCCTGCTGGCCTGCGACTCAGAGGAGTCCATCCTGCAGGTGTGCGACGACTATGACCAGCAGGAGGGCGAGTTCTACTTCGACCGCAACCCGGGGCTGTTCCCCTATGTGCTGCACTTCTACCAGACAGGCAAGCTGCACATCATGGAGGAGCTGTGCGTTTTCTCCTTCTGCCAGGAGATTGAGTACTGGGGCATCAACGAGTTCTTCCTGGACAGCTGTTGCAGCTACCGGTACCATGACCGCAAGCTAGAGAGCCGGCACAAGAGCTGGGACGAGGAGAGCGACGTGAGCAGCGTGGACACCTCCGTGGATGAGATCTCTGACCTCAACAAGGACATCCAGCACTTCCAGGATGTGCGGTGCGGTGGCGTGCGGAGGCGGCTGTGGCTAACGCTGGAGAACCCCGGCTACTCCATCCCCAGCAAGTTGTTCAGCTTCGTGTCCATCAGCGTGGTGCTCAGCTCCATCGCCATCATGTGCATCAACAGCATCCCCGAGTACCAGCATCTCGACGAGGAGGGCAAGCCCATCGAGGAGCCCACCATGCAGGCGCTCGAGTATTTCTGCATCTGCTGGTTCACCTTCGAGGTGCTAGCACGCCTGCTGCTGGCACCCAACACCCGCAAGTTCTTCCTGCACCCGCTCAACATGATCGACATTGTGTCAGTGCTGCCCATCTACATCACGCTGCTGTTCGACCTGGCGGCGGGTGGCGAGTCCGAGCTCGGTAACATCGGCAAGCTGGTGCAGGTGTTCCGACTGATGCGGATCTTCCGGGTCCTGAAACTGGCCCGCCACTCCACCGGGTTGCGCTCCCTCGGGGCCACGCTGAGGCACAGTTACCGGGAGGTGGGCATCCTGCTGCTGTACCTGGCGGTGGGTGTGTCGGTGTTCTCGGGGATGGCCTACACTGCGGAGTACGAGGAGGATGTGGGGCTGGATACCATCCCGGCCTGCTGGTGGTGGGGCACTGTGAGCATGACCACGGTGGGCTATGGGGACGTGGTGCCGGTCACTGTCGCCGGCAAGCTGGCTGCCTCGGGCTGCATCCTGGGGGGCATCCTGGTGGTGGCTCTGCCCATCACCATCATCTTCAACAAGTTCTCGCACTTCTACCGCAAGCAGAAGGCGCTGGAGGCCTCCGTCCGTGACAGCAACAAGAAGAGCGCGGCCGCGGCAGAGAAAGCAGCAGACAGCTCCGAGGGGGACAGCCAGTGTCTGGGAGAGCTGGAGTCCGagctgggggaggaggaggagggacagGAGACGGCCTACAGCATCAGCAGCATCGAGGTGCTGCCTCCACCCTGGGAGAGGAGCAGCCCAGTGGTCAGGAGAAAGGAGCTCCCCAATCTGTAGCCTATCGCGGTGATCGCCCAGAGCCCTCCTTGGGAAGCCCAAGCAGCCCGCCTCTGGCACAGAGAACCTGCAGGCTGTGGGACACAACACCCGAGTACTCGAAACAGGGCACAACATAGCAGCCTCTTGCAGGAGCAATCCTGACTCCTGTATTGGCTCGCTAGGTCTGGGCTTGCTCCTTTTAAATCGTCCAGGCTCTGCCTCAGGGTTGGGTATGTACCTGTTGGTGCATGAGAAGTTATTGGTGTTGCTGGGCAGAAGACTTAAAGACAAACATGCAAAACCTCGAGATTTCAAATACCTTGTGAACACATCGGAGAGTTTGAGACTCCTAATGCGTGGTGTCCAAACTGCAGTGTGCACAGACTCTGCTGTAGCTCCGGGACAGAAGAATGCTTAGTATATATTCCTGGGAGTGTGCAACAcaagacaagaaaaaataaaagaggaagACACTGGGAGCAAGTGAAGGACATTCAGACCACTGGGACTCATTTGCACCATCTTTTAAAATTTGATcacacagaagaaagaaaatacatctgaCAAGCAACAGAAAAGCCTCCTTATCCCGTGTTAGGTTCTTGAGCACTTTGAGAGTCACGGGCGTCTGTGTGGTGCAGGAACACGTGTAGCAGTTCAGAGCTCTGGCCCTGCCCAATTCCAGTGTTGTTTCCACCTAGACAGGAGCCTCTATCCCCCTGTCCTGGAGCTCAGCCACAGCCCCAGCGttcctttttaattacattcaatttttacGGGAACTGAGGGAATTTGCCCAGACACCTCAAACTGCAACCCCCCCTTTACTTTTATAATCATTCCATAAAAAAGTTCAAAGACACAAGCCAGAGATAACTCACTGTGATCTGTTTGTTTAGTAttggggaacaaaaaaaaacctaataaCAGCCAGGCATGCAAAACAGATTTTAGAGCTTTGTTCCTTCACTCTAAAAGCCTTGTGTTCACCCATCGAGGACGACACGCTGTCTTCCTGCGATGATGGGAGTTAAATTTTTTATCGCTTTCGCAGCCCAAGGGCTACAGATGCTCACGAGGGGTAATTTTATGAATGCTGAAGGCTTCCTATGCACAGCAGGTCTTAAGTCACTTAGTGCTTCCATTCGCTACTGTGCTGCACTGCCAGTCTGATTGCAGACCCGCAGGCCGCCAGCGCCAAATCTGCTTCCAAGTTCTCCCCTTCTCCTTCCCTTCCTCAGCCCCACCCCCCAATCCATCCCTTGTACAATGCTGTCCCCCTCTCCTTTCCCTCCACAGCCCACTCCTTCTCTCCTGCCCAAGCATGTGAGCGCACCTCTGAGTAATTGTGGAACTCTGCTCTTATAAGGCTGCACCATCTCCTCCAACGTCTCACCATCATTGCCTCACTGTCCCATTCAAGCACATCCCAGACGTCACTTGTGACCAGTGTAAACATAGCAGCCTGAAGTGACGTGATGAAGCAAGAGCAGCTCTGGACAGGAGCACAGAGGAAATACAGGCATTGCTGCCATCTTTGCTCAGCAACAACCCACCCACTACAGTGCCTTACACATACTTGGAAAGCAGATAATTTGATCCCACTTTACAAAACTGGCCACAAATCCCTAATTAACTAATGTGTGAACGCCACACGGGGGATAGCCCTTGAATATCTGCATGTACCCCGTCTGTAACACGAACCCCTACCCCTGACCCTCCACCCTCCACCCTGCACCATAACTGTTACACATGTGATCACTATCAGAGCTCAGATGAAGTGTTGGAGGTATTTGTGTGTTATTCCTGCAGAGCCCATACATTCAATCATCAGGAATTTGAAGCCATTATTGTGAAGCCTGGCCAACAGTTTGTCACATGAGTAAAACTAGGTTGCACCACTCCCTGCTGTAGTTAATGGAGCCCTTActctacagtagctcatcttaCCAGCCTGCTAGTGCAGCATCGTGAGCAGCAGATGGATGCGATTCCCTCCCCCGGAGCCTCCCCCTGCTGTAATGCAGTATTGTAAAGCACACACTCTTTCTTCGGTGCTGCTGTTCATTTGCTTTTGTCTCACGGAGTGAATCAAAGCACCCGTACACCACTGGAGCAGAACAAACGGTAGCGTGCTCGAAGGGGAGGTCATCAGGGTTAAGGGGCTTCAGGAGTGTGTGGGATTTgataagtttgtttttaataagatcCTGAGTATGCTATACCCCTCAGtcacactgagagagagtgtgtaatGTCTCACTGCATAGGACTGTATCAGGCTTCAAGGCCTTCAGACTGTGACAGTGCTGGGCATCAGTGTGGACACTGCGGGGGCCGGTGGTGAGTAAGGGAGCTCCAGTCAGGGCTGCCGGTGTGACACGGCACAGGGGAGAGTGCCTGGGAGAAACTGTGCGCACTGCTCTCGGAGCTCCCTGCCCACTAATTGAATGAAATCACTTCTCCTCCGCTCCTCTAATGAGACCGACTGGAGACGGGAGGAATTCCCACAGCTGGCACCATGGCACAGCTCCTGCCAGCCAAACTCGGAATCCCACTCCTCGGGGGGGGTCGGGCGGGACACAGCTGGAGCCTTCACCCACATTCCACTCCCTGATCATGAAGACTGTATGGAAAGGATGACTGTAATACTCAGTTCTGGAcaccttttgttttaaatcaaaatagacTACAGAGCTGGTGTGACATGAGAGGCTGTGCAGAGCCTTATCTCCGCATCGCCATGGAGCGAACTTAAACCTGGCAGAGCCTCCAAGGGCCGTTTAACAGACATCGAGCCCTCTGTCTCTCCAATAAGCAGGGAGCACGAGCAGCTCTAACTGAGAGCCATGATCTGCCTCTGCCTGCTCCTGTACAGTGCACTTGTGAATTAAGTCTCCCCCAAGAACAACTGGGACAGGACACTACCCCTTCCACCCCCTCACCCTCACACCGAAGCCCACCCTGAACCCTCTCCCCACGCAACACAGCTTCCAGCCTTCTGTTCCTGCGCTTTAAAAGCTTGTCAAGTCTTCCAGCTACTCCCCCTGACAGAGCTCTGTGGAGAGGGGAGCCCCGCCACCCCCGCATGGTCAACACGCAGACGgcgttttcattcatttattgcattttcaaaattagCCAGGGGGAGGTCTTCAGTGCTTCTTTCTGGAAAACATACCACGAACCAAAGAGTCTCGGGGAGCCGCAGACAGGTGACATTTACAGCAGAGCGATGACTGTAAACCTGTACAGATAATCACGATAATGAAAGGACAGCCCAGGCACAGGCTTATTTATGGGATGCTGTGAGGTGgtagtgg
>TU34216
GCAATGCGAGTGCGGGGGGACGCAGCCGATGCGCAATTACACGACTAGGAAAACCAGAGAGTCTCCAAAgtgcagaaaaacaacagcaccgATTTGACATCTGCCTCAgaagaaagcaaagagggagATTAACGCAGGGACTGGGTCTGATTTTAAGAGAAAGGAGATTTGACTTTAGATAAGTGCTTGAAAGTCAAAGGTGGGAGGATCATTTGATAGAGGTCTCTGTGCAGAAGTTACAATGGGATAGATGTGAGAGCAGAGCGGAACAGAAGTACAAcacagatagagagaaagagccCAGAGCTTCATCGACACGACAGCTCTCTTGTGTCGCGCAGCGGGATCGCGAGGAAGGAGCTCTGCAGTGAAAGTGAGTTGAAGCTGCAAACGACCCGAGCAGAGATCAGTGGAGAAGAGCAGCACCCAGGTACAGCACAGCGCACGGCCATCCCCCAGGGGTAgagcacagcagagcacagtCCTGCacttttaaacaacaacaacaactataataacaataataataataataataataataataataataataataaaccatcaTAATGCA

Function


NR:

description
PREDICTED: potassium voltage-gated channel subfamily S member 2-like

GO: NA

KEGG:

id description
K04931 KCNS1, KV9.1; potassium voltage-gated channel delayed-rectifier subfamily S member 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00007923 True 4897 mRNA 0.54 3 37204747 37216558
TU34216 False 574 lncRNA 0.46 3 37203870 37205956

Neighbor


gene id symbol gene type direction distance location
AMCG00007925 NA coding upstream 4046 37191982 ~ 37199824 (+)
AMCG00007930 NA coding upstream 32768 37168866 ~ 37171102 (+)
AMCG00007922 NA coding upstream 67654 37135667 ~ 37136216 (+)
AMCG00007919 NA coding upstream 86674 37113631 ~ 37117196 (+)
AMCG00007921 NA coding upstream 105015 37097926 ~ 37098855 (+)
AMCG00007924 NA coding downstream 27709 37244267 ~ 37246807 (+)
AMCG00007931 rims4 coding downstream 120013 37336571 ~ 37346115 (+)
AMCG00007934 LOC104960738 coding downstream 253365 37469923 ~ 37481171 (+)
AMCG00007938 blcap,bc10 coding downstream 278640 37495198 ~ 37496202 (+)
AMCG00007940 NA coding downstream 279659 37496217 ~ 37501731 (+)
G27334 NA non-coding upstream 110540 37092649 ~ 37093330 (+)
G27300 NA non-coding upstream 247416 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 358346 36843981 ~ 36845524 (+)
G27253 NA non-coding upstream 435931 36767653 ~ 36767939 (+)
G27216 NA non-coding upstream 476753 36685310 ~ 36727117 (+)
G27400 blcap,bc10 non-coding downstream 278601 37495159 ~ 37499385 (+)
G27462 NA non-coding downstream 560507 37777065 ~ 37777462 (+)
G27489 NA non-coding downstream 800310 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 810822 38027380 ~ 38027923 (+)
G27552 NA non-coding downstream 1223016 38439574 ~ 38439892 (+)
AMCG00007889 NA other upstream 901029 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1583069 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 3408929 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 5763492 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 7384318 29755040 ~ 29819552 (+)
G27518 NA other downstream 928426 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 952012 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1139371 38355929 ~ 38423155 (+)
G27551 NA other downstream 1215487 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 1476181 38692739 ~ 38708915 (+)

Expression



Co-expression Network