AMCG00007926 (stk4,LOC103371188,LOC108435692)


Basic Information

Item Value
gene id AMCG00007926
gene name stk4,LOC103371188,LOC108435692
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37217770 ~ 37238928 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007926
CGACATGTCTTGCTGCAGGGGCGCGCTATGAATACAGCCCGCAGGGAAGAGCGCCCCCTACCCGCGGAGCTCCGGCAGCGGGGCTTTGTTCCGTCGGCGGCGCTGTCCTGCCCCCAGCCGGCCCGCTTCCTGTCTCAGCTGTCAAGCAGGCGGAAGAAACAGCCCAGCTACACTGCCGAAGAGCGGGGAGAGACCCACCGCGGGACGGAGCgaatgagagagacagaaagagagaaagcaggagagccagagccagagccGCGCAGCCCACAGCGCTCATTAGAAAGTAGTAGCACGCAGTGAGAAGATGGAGGTTAACGGAGGCGCGTAGTTAGGTAGCGCTGAGATCGGACTCGGGAGGAAACGCGACTGTATTACACCGACGAGCCCAGCGCCGGACAGCCGGGCGAAGTTAGCGCAGTTCGCCAGCTCTGCCAGCCGGTGTGTGCAGCCCGGCCGGGGCCGTGTCTCAGCCGCTCGGAGCGGGGGGAGGTTGGAGGCGAGCATGGAGAAGGTGCAGCTGCGAAACCACCCGCGCAGGCAATTGAAGAAGCTGAGTGAGGACAGTCTGACAAAGCAGCCAGAGGAGGTGTTTGATGTTCTGGAGAAGCTCGGCGAAGGGTCCTATGGCAGCGTGTTCAAAGCCAACTATAAGGAGACGGGGGAGATCGTGGCAATCAAGCAGGTGCCAGTGGAGTCTGACCTCCAGGAGATCATCAAAGAGATCTCCATCATGCAGCAGTGTAACAGCCCGCATGTGGTGAGGTACTATGGGAGCTACTTCAAAAACAGCGACCTGTGGATCGTGATGGAGTACTGTGGGGCAGGCTCTGTCTCCGACATCATCCGGCTGCGCAACAAAACGTTGACAGAGGAAGAGATCGCCACGATCGTGCAGTCCACGCTGAAGGGACTGGAGTACCTGCACTTCATGAGGAAGATCCACAGGGACATCAAGGCCGGGAACATCCTGCTCAACTCTGAGGGTCAGGCCAAGCTGGCGGACTTCGGCGTGGCAGGACAGCTGACGGACACCATGGCCAAGCGCAACACTGTGATTGGGACGCCGTTCTGGATGGCACCCGAGGTCATCCAGGAGATCGGGTACAACTGTGTGGCAGACATCTGGTCCTTGGGCATCACGGCCATAGAGATGGCAGAGGGGAAGCCCCCCTACGCAGACATCCATCCCATGAGGGCCATCTTCATGATCCCCACCAACCCCCCCCCGACGTTTAGGAACCCTGAAGTGTGGTCCGAGCCGTTCCAGGACTTCGTGAAGCAGTGCCTGGTCAAGAACCCGGAGCACAGAGCCACGGCCACACAGCTACTGCAGcaCCCCTTCATCAAGACGGCCAAGCCCAACTCCATCCTGCGGGCCCTCATCACGGACGCCATGGAAACCAAGCTCAGGAAGCAGGAGGCGCTGCAGCGCGAACAGGAGGAGGACGACGACAACTCGGATGAGGACGACGTGGACTCGGGCACCATGGTACGTGCCAGCCCCTCTGACTCGGGCACCATCCGGGTGGTGGGGTCACTAGGCGAGGGCGTGTGCACCATGGTCCAGCACGACGGCACGCTGGAGTCACAGCTCGGCACTATGGTCATCAACAGCAAAGACgacgaggaggaggacgaggaggaggccGGCACCATGAAACGGCGGGATGAGACGGTTCAGCCGGCCAAGCCCTCCTTCCTGGAGTACTTTGAGAAGAAGGAGCAGGAGGCCAACAGCCACGACACAGACCGCGGCTCAGCAGGCTCCCGCAGGCCTGCTGCGGAGGGAGACCTGGAGGTGATGAAGAGCTGGAGCGTGGAGGAGCTGCAGAACCGGCTGGCCTCACTGGACCCGCAGATGGAGCAGGAGATCGAGGAGATCCGCCAGCGCTACCAGGCCAAGCGCCAGCCCATCCTGGACGCCATCGAAGCCAAGAAGCGACGGCAGCAAAACTTCTGAGTTTGGGGCTGGGCAGGGCTGGGGTGGCAGCAGGGCGGAGCTTGGCTCTCCTTCAGACTCTTCCCCTCGGTGCGTCCCTGCCCCCCCCTCACTCAGGACTGTGCCGCCACACTGCGGGGCCGACCCCAGCAGCTGCCATTCCCAACCACTGACTCAGCAAGTGAACACATtcgattttattttgttattttttttttatttttcttctgtggaTCAGGATATTTGATATAAGATCACAAAGTGCTGTGAATCAGGACTGCCGTGCAGCAGGTGGGTTCCTTATTAACTTATTACCAGTCGTCGTCTCTGTGCAGAGCTGGTGCGTGTCTGTGACTGCTGCGGGACTGTGTGACAGTCCTGAGAGCTGGTCTGAGAGAGTTCCTGCGGCTGCCCCTGGTCCTGCTCTCCCTTCCTGTGGTCCTCACTCACAGGGGAGTCCCAGGGTGCCACTTGTGCTGGATTTCACACCATTCAGAgaatctatttttttatatatgtttttttccaacCTTTCTTGAATATCTGTGCATCATTCACTATACACGTGGCAGACTCCCAGTAGAAGGGTCTTCATCCCCCTGCAATGAGTGATCAGATGCTTGGGCGTGTGCTTACTGCACTTACCCCTTTCATAGAACTGCTCATAACTTGGACTGAGACTTTGTCATCAGACCAAACCCAAACCACGCCCAGGGTTAAGCCTGTAAGATTCCCTGTAGGACAGTCCCCCTGCCCGGCTCCGATAGAGACTCTGCAGGCTGTGTGTCCTGAGTCCAGAGAGTCGCAGGCGCCAGCGGGGTTAAACTGCACTGGTCCCAAGCTAATTTccgaagagagagacaggttaCAGGCCTTTACTCTTGATTTAGCCCTGATGAGATAAAGAGCTTCCTCTGGGAGATAGCAGAGAGGAAGTGCACCTGTGGAGCCGTTTCCACTGTTCTGGAGTGCTTTTGCAGGGCAGCGTTTTAGCATGGGGGGGGCGGGTAATCGAATCAGTGAGCAGGGGTAATGCAGGACTGGATACTCTGCTGCGCAGCACCCTGCTGATGAAAGGCGTccttccctttttttatttttattttgttcttatttattttcgctTGTGTTTTCCCCTCTCTGTGAGAAGCTGTGACTTCTGCTGGGGGGAAAAAGTGAAGTCTGTTTATTGTCAGTCTGTTTTCATTtgaccttttattgtttgtttttgatgacCAGATTGAAACCAGTGTTACAATCCTCCTTTCTTTAAAGTAATCCGATTAAATAAGCAGGAACTCTCTCCCATATAAACCAGTTTCTCAGCTAAGGGCTTCCTCAGGGACTTCCTTTTGTACTTTTTGTCCTAACATTTTCTGTACCCTGTGTCTTAGGGATGTTTTGTATGCACTGCCTCTAACGACAGGGCTGTGCGTTTGATCACTGTTACAACTGTTTTCCAGGACCTTTATTAATGACCCAAAAGAGAATTCTTGATTGTTAATATTGAAATGCCAGTCCATTGTGCTGTATTCAAATCCACAGTGTAATAAGCTGTGCAAGGGGGAAGTGCAAGCTGTGTCCTTCCCCCAAGGGCCACTGTCAGCTGAGGCCCCTGGCTGTGACCTAGTGCAGTCTCCAGACTGGTGAATCTGTGCTAGGGCACCCACTCCTCATCTCACAAGGAGGGTCGGTCCAACTGGACAAGCCAAAATGCATGCAGTATGGATTTTATGCTGaggtatacattttgtatttttttatgagtGTTTTGATTTTTCTGAAATGTCAGCGCATTGCCATTTATTGTAATTCTGACCTCACTGTGTGTTCAGTGAATTCCCTGTAATGACATTCCACTGTTGATAATGAATGTGATCAGTATGATTCCCCCAGTGTTGTGTTGGtgattatagttttttttttaatgtttaatgtttttttaatgtcatttgtATAACTCCTAGAGAATTACAAGTCGTGATCACTGGATAACATTTCAGCTTCTCTCTTTATGTGAGTGAAGGAGAAACTCCCCACAAGGCTTCACCTGTCCGCGGAGACTGTATGGCACGGTGTGAGAGGGAAGTTAACTTTCCATGGTGCCTGTAGTGTTGCGATGTACAAGCCTTCAGTTATGCAATGATGTGGAGTACTATGCAGCGTTTCACATTTGTTCTGTAGAAtgtttgtacattaaaaaaagatttaaggAGCAGAACAGTtctctgggttttgttttgttccccagCAATGCTGCGGTACTGAGGTTGTCAGCACCTCTCCGGAGGTACAGCAGCTCCTCTGCAGTGTGATCTGGTGGCATGTTTTCTCTCGCCTGCATGTGCTGCACTTGCTTCTGAAACTGAAGCAGCCTTGCCAACATTTTCCCTGCTTCTCCTTGAGAGTTTGGGCACCAAGACAAAAGTGCCCCCATCGCAG

Function

symbol description
stk4 Enables several functions, including ATP binding activity; magnesium ion binding activity; and protein homodimerization activity. Involved in several processes, including hippo signaling; negative regulation of canonical Wnt signaling pathway; and peptidyl-serine phosphorylation. Acts upstream of or within several processes, including positive regulation of peptidyl-serine phosphorylation; protein autophosphorylation; and protein stabilization. Located in cytosol and nuclear body. Part of protein-containing complex.

NR:

description
Serine/threonine-protein kinase 4

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04411 STK4, MST1; serine/threonine kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007926 True 4384 mRNA 0.53 11 37217770 37238928

Neighbor

gene id symbol gene type direction distance location
AMCG00007920 NA coding downstream 76483 37138227 ~ 37141287 (-)
AMCG00007916 NA coding downstream 193959 37013304 ~ 37023811 (-)
AMCG00007915 NA coding downstream 224796 36988663 ~ 36992974 (-)
AMCG00007910 gdf5 coding downstream 275902 36936827 ~ 36941868 (-)
AMCG00007911 LOC103464266,LOC105008435,LOC107595422,LOC107087943,LOC107666149,LOC108272058 coding downstream 317100 36885380 ~ 36900670 (-)
AMCG00007928 LOC105008385,LOC108414618,LOC106566651,LOC107702880 coding upstream 9451 37248379 ~ 37259255 (-)
AMCG00007927 ywhaz,ywhaba,LOC105901861,LOC105906814,LOC100136192,LOC108412308 coding upstream 21638 37260566 ~ 37267059 (-)
AMCG00007932 NA coding upstream 112683 37351611 ~ 37353614 (-)
AMCG00007933 NA coding upstream 130983 37369911 ~ 37383595 (-)
AMCG00007936 NA coding upstream 165513 37404441 ~ 37404863 (-)
G27335 NA non-coding downstream 124470 37092649 ~ 37093300 (-)
G27302 NA non-coding downstream 248014 36967127 ~ 36969756 (-)
G27254 NA non-coding downstream 449831 36767653 ~ 36767939 (-)
G27252 NA non-coding downstream 457181 36760345 ~ 36760589 (-)
G27243 NA non-coding downstream 471904 36744068 ~ 36745866 (-)
G27435 NA non-coding upstream 327841 37566769 ~ 37566983 (-)
G27436 LOC107666014 non-coding upstream 328275 37567203 ~ 37567566 (-)
G27438 NA non-coding upstream 331331 37570259 ~ 37570881 (-)
G27463 NA non-coding upstream 538141 37777069 ~ 37777318 (-)
G27491 NA non-coding upstream 778302 38017230 ~ 38017469 (-)
AMCG00007907 NA other downstream 371187 36842475 ~ 36846583 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 1206775 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 2347963 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 5401619 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 5874978 31338716 ~ 31342792 (-)
AMCG00007929 NA other upstream 1156 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 255983 37494911 ~ 37499392 (-)
G27437 NA other upstream 328689 37567617 ~ 37569284 (-)
G27439 NA other upstream 332029 37570957 ~ 37571488 (-)
G27442 chd6 other upstream 334106 37573034 ~ 37588525 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07033076_07038297 STK3 coding CI01000054 null 7031700 ~ 7038297 (-)