AMCG00007927 (ywhaz,ywhaba,LOC105901861,LOC105906814,LOC100136192,LOC108412308)


Basic Information

Item Value
gene id AMCG00007927
gene name ywhaz,ywhaba,LOC105901861,LOC105906814,LOC100136192,LOC108412308
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37260566 ~ 37267059 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007927
ATGGATAAGAGTGACCTGGTACAGAAGGCCAAGCTGGCAGAGCAGGCTGAGCGCTACGATGACATGGCGGCAGCGATGAAGGCGGTGACGGAGCAGGGCCACGAGCTCTCCAATGAGGAGCGTAACCTCCTGTCCGTGGCATATAAGAATGTAGTGGGTGCACGGAGGTCCTCCTGGCGTGTCATCTCCAGCATTGAGCAGAAGACCGAGGGCAACGAGAAGAAGCAGCAGATGGCCCGCGAGTACCGCGAGAAGATCGAAGCTGAACTGCAGGACATCTGTAATGATGTACTGgGACTCCTTGACAAGTACCTCATTGCCAATGCAACTCAGGCTGAAAGCAAGGTCTTCTACCTGAAGATGAAGGGGGATTACTACAGATACCTGTCTGAAGTGGCTTCTGGAGACTCCAAGAAGACCACAGTTGAGAATTCCCAGCAGGCCTACCAGGAGGCTTTCGAAATCAGCAAGAAGGAGATGCAGCCGACACACCCCATCAGACTGGGGCTGGCTCTCAACTTCTCAGTCTTCTACTACGAAATTCTCAACTCCCCTGAGCAGGCCTGCAGCTTGGCAAAGACGGCTTTTGATGAAGCGATTGCTGAACTTGATACCTTGAACGAGGATTCCTACAAAGACAGCACTCTGATCATGCAGCTACTAAGGGATAACCTCACTCTGTGGACATCGGAAAACCAGGGTGACGAAGGGGAGGCTGGCGACGGGGAGAACTAATGGCGTTGCACTTCACTGTTAATCCACCCACACTCTTTATCTTACACACATACAGCCCATCCATACCCTGCTCCATCAGGACCCCCCCCTTCTGTATGACAAGCAGCATGAATTGTACCTGACCTACCAGACGTGCCCTTCTCAGATAGCTCAGAGGTGACAGGGTAACATTCACTTGTTAGCAGGctcacagttttgtttgttttttctggttttgatttttttttttttttttactctgcccctcccccacccctcctcgTTTGTAAATTTAACACCAGATCTAGTAGAGAGATTGattttcccccccaccccctagttATGCCCCGGTTCCCTCcttaaattcaatttatttttaatcttttgttcTTCCCCTAACAGATTGTGCATTTGTAGTAttcatctattattattttttttgttattgtcaatTTTATAGTGTAATCTGTCATGGCATTTGCAGGTTTTATTCTAAGGTTATTAAACTGGCAGTTTattttcaccaaacactgtgatggttagttttgtatttcccctgccccccccctcccacccccaccccatcttttttgtttctttcctacaccatatatctatatatgtatttattcacataaatacatatatacatgtatccGAGTAATAATTCTGGTctgtaaaatgcagaaaactGCGTGCGGTCCTGTGTTTGGGTAACAGTACAATTCTGCTGTCGGCTCATACAGAATGGATAACCGGCTGTATTGTGACACTGACTAATGTGCACATTGCTGTGTAATCATGTTCACGATTTTCTTTCACAAACAAAGAGTCAAAAAAGGGACCCTAGGTTTGCCATTCCAGAATTGTCCAGATTTGTTAAAACATTCCATCAGAACATGATGTTTTTCTTGAAGcgacaacaaaaaaagtaaatgaagaCCTTTTTTTGAACAAACTGGAGCATTAGCCTGATGTCCAGGTACAGTGAGGCAAAGGTGCTGTTTGACATCGTACAACAAACTTTGCTCTTAATTATTGTAACTTTACATTTCTCTCCTTTGCATAATAATGGATACCAGTTTTCAGTACAACTAAAACTGTcaattttaagcatttattttcgAAGTAAATGATAAAATCTGTCTTAAATTGAATCGTAATGTTGTGAACCTGCTTGCATTGAACCACCTTAAAGCCGTTGCGTTTAGTTTGTCCTATCCTGGGTTTCTCAAGCCTACTCTGACAGTCCAAACTGACTCTAGTTTTTCCTACACaatgacaatgaaaatgaaaagcgaGCAAAGTCAATTTGGTTGATGTGTGCAAGCTAGTCTTTAGACATGAAGCATATAGAATCCAATCGTGAGGAAGTGTGAGAGCAGTGACCATCGTTTGACCACTACAGACTTCACCGTCTGGTCATTTGGACCAGGGCTGAGGCTTGTCAACTGTCCTCCATCCCTGTGGTCTCCTGGATGTGCAGGATGAAGTTTGTAGGTTAGGGACCTGAAgcaaaagatatatataaagGAAGCTGATTAACTCAGTGTCACAATACCAAGCCACCACCATTACATTCCACTTAGGTGTAGAATtcatctgtctgtcagtctgtctcgCTGAAGACAATGTTTCATGCACTGAATAAAATCTCCCCTCTAGCTGAACAAATGGCAGTTAATATTCTACGCTTGATAAATGCAGTAGTGAATGTGGAACCGAGCCTGTCTGTATATCTGGTATCTCTActtgctttgtttttactgaCCAGTATTCTGCCTAAAGTTTGCTTCTGTGACGGTTTTATCGCCTAGCGCGCACGTGGTTGTGAAAATTTAGtatagcttaaaaaaaaaaaatttaaaaaaaatttacaaaaaaaattaaaaacctggTTATTGACGTAATACTAGATTTGTGTATGTCTTTTAAAACAGTTCTAGTTTCACCTTACATGTAATAATCAGGAAAGTGTACAAGAcaatttaaagtgaaataaaagttttatCAGTTCAGAATTTTCCTGCTTTTCTGTTTAACAAACAAAGTATGACTTTTTGTTCCCTGTTTTGCAAACTGAACATATTTAGAATAATAACCTTTTTGACATGATCTGTTATGCTATGACATGATATGCTTCatgatttgttaattaaaacagtGATGGTGTTAtaggtttttatatatatccaTGTTGTCTGCACCTTGTTTGCTGTTTAAATTCGTACATTATCTTAACTATATGTTTGTGATTTGAACCAATATAGATTTCCCTTTGATTTTTGCTGTGTTGCAGAGACCCATATTAACACATTAACAGCATCTCTGCAATTCAAAAGAACCTGTTTTGTGAAACAAATGccagcttatatatatatatccatgaTGAAATGATAATGTTGGCTGAAGAGACGCACTCTGAAGTGTTCCACCGGGCAGAGTGTGATCGACACAGTGTGTACAGTAACACACGGCACTGCAGAGAAGGAAGTCATCTGACACAAAATGTGGGCTAGGTTTACACAGCCCGCTCTACATACAGAGCAAAATGATTGCCATGATTATGCAGCTTATGTtactattttaatgaaaacttgttaaaaacaatttacaggaggaaggcttttttttttttttttctctttcctgatTTATTGTGAAAACGGCCTAGTATGAAGTAGCTTAGAGAAAACTGGGTTACAGAGTACATGTCTACTACAAGAACCCTATAGCAGTGTGCAAATCTAGGTCAGTCGTTTCAAACACTTTTTCATCTCGAGTACCACAGGGATCTTAAATCATCATATTAACTGAGCAATCCTAAAAAGGCTACAGCAGGATAGATGGCTGGGCTGTTAGAACAAGACGTTTGTTCATCTCTGTATCGACTTCACTTGTCATGCATTATTACTGGCACATGTACCATGGTTAAAGCTCGCTTATCTCGGTAGCTACTGCTGCGTCATCTTTATGTACAATAAATTTGTTGAAATCAATGTGGATATTTCCCTTTCTATGTGATGTAGAGGTTTTGGTAGCAAAAGCAATGCTCCTGTTCTCaccttgaaataaaatgtaattggcatcta

Function

symbol description
ywhaba Acts upstream of or within phagocytosis, engulfment. Predicted to be located in cytoplasm. Is expressed in several structures, including nervous system; optic vesicle; otic vesicle; solid lens vesicle; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta).
ywhaz Predicted to enable monooxygenase activity. Is expressed in several structures, including EVL; epidermis; nervous system; periderm; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta) and YWHAZ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta).

NR:

description
PREDICTED: 14-3-3 protein beta/alpha-1

GO:

id name namespace
GO:0006911 phagocytosis, engulfment biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007927 True 3806 mRNA 0.41 5 37260566 37267059

Neighbor

gene id symbol gene type direction distance location
AMCG00007928 LOC105008385,LOC108414618,LOC106566651,LOC107702880 coding downstream 1311 37248379 ~ 37259255 (-)
AMCG00007926 stk4,LOC103371188,LOC108435692 coding downstream 21638 37217770 ~ 37238928 (-)
AMCG00007920 NA coding downstream 119279 37138227 ~ 37141287 (-)
AMCG00007916 NA coding downstream 236755 37013304 ~ 37023811 (-)
AMCG00007915 NA coding downstream 267592 36988663 ~ 36992974 (-)
AMCG00007932 NA coding upstream 84552 37351611 ~ 37353614 (-)
AMCG00007933 NA coding upstream 102852 37369911 ~ 37383595 (-)
AMCG00007936 NA coding upstream 137382 37404441 ~ 37404863 (-)
AMCG00007935 NA coding upstream 156658 37423717 ~ 37438509 (-)
AMCG00007941 tmem74b,LOC102310340,LOC102787133 coding upstream 220669 37487728 ~ 37490833 (-)
G27335 NA non-coding downstream 167266 37092649 ~ 37093300 (-)
G27302 NA non-coding downstream 290810 36967127 ~ 36969756 (-)
G27254 NA non-coding downstream 492627 36767653 ~ 36767939 (-)
G27252 NA non-coding downstream 499977 36760345 ~ 36760589 (-)
G27243 NA non-coding downstream 514700 36744068 ~ 36745866 (-)
G27435 NA non-coding upstream 299710 37566769 ~ 37566983 (-)
G27436 LOC107666014 non-coding upstream 300144 37567203 ~ 37567566 (-)
G27438 NA non-coding upstream 303200 37570259 ~ 37570881 (-)
G27463 NA non-coding upstream 510010 37777069 ~ 37777318 (-)
G27491 NA non-coding upstream 750171 38017230 ~ 38017469 (-)
AMCG00007929 NA other downstream 17583 37240084 ~ 37242983 (-)
AMCG00007907 NA other downstream 413983 36842475 ~ 36846583 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 1249571 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 2390759 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 5444415 31804899 ~ 31816151 (-)
G27416 blcap,bc10 other upstream 227852 37494911 ~ 37499392 (-)
G27437 NA other upstream 300558 37567617 ~ 37569284 (-)
G27439 NA other upstream 303898 37570957 ~ 37571488 (-)
G27442 chd6 other upstream 305975 37573034 ~ 37588525 (-)
G27502 NA other upstream 818870 38085929 ~ 38091878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_04918509_04920561 NA misc CI01000026 null 4918387 ~ 4920604 (-)
grasscarp (Ctenopharyngodon idella) G354702 NA non-coding CI01000146 null 142791 ~ 155946 (-)
eurasian perch (Perca fluviatilis) G50493 LOC103467546,LOC102230394,LOC105927130,LOC106947997,LOC103145058,LOC101167287,LOC104935375,LOC108231917 non-coding NC_053116.1 CM020913.1 17098622 ~ 17104964 (+)
bowfin (Amia calva) G53999 NA non-coding CM030126.1 CM030126.1 22147308 ~ 22147564 (-)