AMCG00007928 (LOC105008385,LOC108414618,LOC106566651,LOC107702880)


Basic Information

Item Value
gene id AMCG00007928
gene name LOC105008385,LOC108414618,LOC106566651,LOC107702880
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37248379 ~ 37259255 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007928
tacaacctGGACGTGAAGCGCTAGTGACTTGTCTGACCGCTGAAACCGGTAAGTCGTTTTGAAGTCGGTTTACAGGTTTTGCGGCCTTGATTTTTACATGCTTTGAGCTCGTTGAACTGCGGACGACAACGGAGTGAGCGGACAGTGATTTTGGTTATTTTCTCCGGCTCGTATTTTTGTCGTGGATACACATTTGAGCACGCGATGAACAGCAGTGGCCCAGCATACCCCCTGGCCTCCCTGTACGTGGGGGACCTGCACCCTGATGTCACGGAGGCTATGCTATACCAGAAGTTTTCCCCCGCCGGCCCCATCATGTCCATCCGTGTGTGTCGTGACATAATCACCCGCCGATCCCTCGGATACGCCTACATCAACTTCCAGCAGCCTGCTGACGCGGAGTGCGCGCTCGATACAATGAATTACGAGGTCATCAAGGGCCGGCCCATCAGGATCATGTGGTCCCAGCGCGACCCGGGGCTGCGCAAGTCCGGCGTGGGCAACATCTTCATCAAGAACATGGACGAGTCAATCGATAACAAGGCTCTGTATGACACCTTCTCTGCCTTTGGCAACATCCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGCTCTAAAGGCTATGGGTTTGTTCACtttgagacccaggaggctgcCAACCGAGCTATTGAGACCATGAATGGGATGCTGCTCAATGATCGCAAAGTCTTTGTTGGCCATTTCAAATCTCGAAAGGAGAGGGAGGCGGAGTTCGGGGCGAAGGCGATGGAATTCACCAACGTGTACATCAAGAACTTTGGGGAGGACTTTGATGACGAGAAACTCAGGGAGATGTTTTCAGAGTACGGGAAGACGCTCAGTGTGCGGGTGATGGTGGACGAGCGAGGCCGGTCTCGGGGCTTCGGTTTTGTGAACTACGAGAACCATGAAGATGCACAGAAGGCTGTGGAGGCAATGAACGGGAAGGAGCTGGCCGGGCGGGTGCTCTATGTGGGCCGGGCTCAGAAGCGCATGGAGCGGCAGGGGGAGCTGAAGCGCAAATTTGAACAGATCAAGCAGGAGAGGATCCACCGCTACCAGGGCGTCAACCTGTATGTGAAGAACCTGGATGATGGGATTGACGATGAGAGGCTGAGGAAGGAGTTCATGCCATACGGCACCATCACCAGCGCCAAGGTGATGACCGATGGCAACAAGAGCAAGGGCTTCGGCTTCGTGTGCTTCTCGTCGCCTGAGGAGGCCACCAAGGCGGTGACTGAGATGAACGGCCGCATTGTGAGCACCAAGCCGCTGTACGTGGCACTGGCACAGAGGAAGGAGGAACGTAAGGCCATCCTCACCAACCAGTACATGCAGCGGCTGGCCAGCGTCCGTGCCATGCCCCCTCCCATCATCGGCTCCTACCAGCAGTCCTCGGGTTACTTCATGCCTGCAGCCCAGAGCCGCTCTTTCTATGCCCCCAACACAGTGACCCCGATCCGTGCATCCCCCCGCTGGACCACCCAGCCGCCCAGACCACAGGCGCCATACCAGGCCCAGCTGATCAGACCCGCCATGCCGCGCCGTCCCTCCACTCCCATCAGCACCATGAGGCAGGCCTCCACACAGGCCCCGCGGGTCCTGACCAGTACTCAAAGGATGGCCAACATCGGCACCCAGACAGCGGGCGGACGAGCTCCCATGGGTGGAGGAGTCATGCGCAGTGTCAACCAGTACAAATACTCAGCTGGGGTCCGGAACGTGCAGCAGGTCCTCTCCCTGCCCGGACAGATCCCTGTGCAGCAGGTGATGGAGTCGGCGGTCCACGTACGAGGACAGGAGCCCCTCACTGCTTCCATGTTAGCCTCCGCCCCCATGATGGAGCAGAAACAGCTGCTGGGCGAGCGTCTGTACCCACTGATCCAGGCCATGCACCCTGCGCTGGCCGGCAAGATCACTGGCATGCTGCTGGAGATCGACAACTCGGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCCCTGCACTCCAAGGTGGATGAGGCAGTGGCCGTGCTGCAGGCTCACCAGGCTAAAGAGGTCTCCCCCAAGAAGTGATAAGTGCCCCCTCAGCGCCGGGCCCTGCTGCTATGGAGAAAGAGGCTTCAttgaagaaggaaaataaaaatgaaaaaaaaatgaaaaaaaatagtaaaatttaaaaatataaaataaaaaaggaaactagTCTTGCAAACCGCATTTGTTTAGGAAATGAGAAACCTGGCGAAGTGTGTTGGTCGGATGCAGAAAGTTTAATGAGCCAGTATAGGCCGTTTGtaagtgaagattttttttttttttttttttcaaacttttgttaccaaatattatatattcagaACCTTGTAGtttaaatttgtctttttctttgtgcattaaataaaaaccttaaGTGGATCTGGTTTATGGGTATTTATTA

Function

NR:

description
PREDICTED: embryonic polyadenylate-binding protein isoform X2

GO: NA

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007928 True 2437 mRNA 0.54 16 37248379 37259255

Neighbor

gene id symbol gene type direction distance location
AMCG00007926 stk4,LOC103371188,LOC108435692 coding downstream 9451 37217770 ~ 37238928 (-)
AMCG00007920 NA coding downstream 107092 37138227 ~ 37141287 (-)
AMCG00007916 NA coding downstream 224568 37013304 ~ 37023811 (-)
AMCG00007915 NA coding downstream 255405 36988663 ~ 36992974 (-)
AMCG00007910 gdf5 coding downstream 306511 36936827 ~ 36941868 (-)
AMCG00007927 ywhaz,ywhaba,LOC105901861,LOC105906814,LOC100136192,LOC108412308 coding upstream 1311 37260566 ~ 37267059 (-)
AMCG00007932 NA coding upstream 92356 37351611 ~ 37353614 (-)
AMCG00007933 NA coding upstream 110656 37369911 ~ 37383595 (-)
AMCG00007936 NA coding upstream 145186 37404441 ~ 37404863 (-)
AMCG00007935 NA coding upstream 164462 37423717 ~ 37438509 (-)
G27335 NA non-coding downstream 155079 37092649 ~ 37093300 (-)
G27302 NA non-coding downstream 278623 36967127 ~ 36969756 (-)
G27254 NA non-coding downstream 480440 36767653 ~ 36767939 (-)
G27252 NA non-coding downstream 487790 36760345 ~ 36760589 (-)
G27243 NA non-coding downstream 502513 36744068 ~ 36745866 (-)
G27435 NA non-coding upstream 307514 37566769 ~ 37566983 (-)
G27436 LOC107666014 non-coding upstream 307948 37567203 ~ 37567566 (-)
G27438 NA non-coding upstream 311004 37570259 ~ 37570881 (-)
G27463 NA non-coding upstream 517814 37777069 ~ 37777318 (-)
G27491 NA non-coding upstream 757975 38017230 ~ 38017469 (-)
AMCG00007929 NA other downstream 5396 37240084 ~ 37242983 (-)
AMCG00007907 NA other downstream 401796 36842475 ~ 36846583 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 1237384 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 2378572 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 5432228 31804899 ~ 31816151 (-)
G27416 blcap,bc10 other upstream 235656 37494911 ~ 37499392 (-)
G27437 NA other upstream 308362 37567617 ~ 37569284 (-)
G27439 NA other upstream 311702 37570957 ~ 37571488 (-)
G27442 chd6 other upstream 313779 37573034 ~ 37588525 (-)
G27502 NA other upstream 826674 38085929 ~ 38091878 (-)

Expression


Co-expression Network