AMCG00007929


Basic Information

Item Value
gene id AMCG00007929
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37240084 ~ 37242983 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007929
GCAGGCACTCTGAAATGAATGTGCCTCTTCGGCTACCATACAAGCTCCGCATTGTTTCTACCCGGTACTGAGGGATGGTTTGTCCCTCGCCAGTGCCTGTAGTTCAGTCTGCGGTTTGAGTGTGTGCAAGTGAAGGTCGTGTCTTTCTCAGTTCATCCGCCATGTCGTCTGGAACCCTGGCCAAGCCCATCATGCGGGGCATGCTAGCCAAGCGCCTGCGCATCCACCTGCCCATCGCTTTAGGCCTGTCGATCTTCGTCGGAGCCATGGTCAAGTTCACAGTCACAGAGCCCAGGAAAAGGTCCTACGCAGAGTTCTACAAGAATTACGATGCCATGAAGGAATTCGAAGCGATGAGGGAGGCTGGCGTGTTTCAGAGTGTCGGGCCCAAAGGCAAATGAGCTGAAGTGAGTGTTTGTGTTAGAGATGCAGTGTCTCAAAACAAGGGTGGTGggGACGCTGTCATTCCTGGTCTGACTTTCCTGCACTTTGCTGATGTGATGATGCATTGAAGACGGTGGAGCTTGATTTTCTGCGTGTGCtcttataaaaatgtaataaaccatTTCCTCACTGAACATACCTGT
>TU34246
TGGAATTCAAATTAATATGATTCGACTGCTTTGCCTCGCAGGCACTCTGAAATGAATGTGCCTCTTCGGCTACCATACAAGCTCCGCATTGTTTCTACCCGGTACTGAGGGATGGTTTGTCCCTCGCCAGTGCCTGTAGTTCAGTCTGCGGTTTGAGTGTGTGCAAGTGAAGGTCGTGTCTTTCTCAGTTCATCCGCCATGTCGTCTGGAACCCTGGCCAAGCCCATCATGCGGGGCATGCTAGCCAAGCGCCTGCGCATCCACCTGCCCATCGCTTTAGGCCTGTCGATCTTCGTCGGAGCCATGGTCAAGTTCACAGTCACAGAGCCCAGGAAAAGGTCCTACGCAGAGTTCTACAAGAATTACGATGCCATGAAGGAATTCGAAGCGATGAGGGAGGCTGGCGTGTTTCAGAGTGTCGGGCCCAAAGGCAAATGAGCTGAAggGACGCTGTCATTCCTGGTCTGACTTTCCTGCACTTTGCTGATGTGATGATGCATTGAAGACGGTGGAGCTTGATTTTCTGCGTGTGCtcttataaaaatgtaataaaccatTTCCTCACTGAACATA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02268 COX6C; cytochrome c oxidase subunit 6c

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007929 True 587 mRNA 0.51 4 37240084 37242946
TU34246 False 573 TUCP 0.51 4 37240089 37242983

Neighbor

gene id symbol gene type direction distance location
AMCG00007926 stk4,LOC103371188,LOC108435692 coding downstream 1156 37217770 ~ 37238928 (-)
AMCG00007920 NA coding downstream 98797 37138227 ~ 37141287 (-)
AMCG00007916 NA coding downstream 216273 37013304 ~ 37023811 (-)
AMCG00007915 NA coding downstream 247110 36988663 ~ 36992974 (-)
AMCG00007910 gdf5 coding downstream 298216 36936827 ~ 36941868 (-)
AMCG00007928 LOC105008385,LOC108414618,LOC106566651,LOC107702880 coding upstream 5396 37248379 ~ 37259255 (-)
AMCG00007927 ywhaz,ywhaba,LOC105901861,LOC105906814,LOC100136192,LOC108412308 coding upstream 17583 37260566 ~ 37267059 (-)
AMCG00007932 NA coding upstream 108628 37351611 ~ 37353614 (-)
AMCG00007933 NA coding upstream 126928 37369911 ~ 37383595 (-)
AMCG00007936 NA coding upstream 161458 37404441 ~ 37404863 (-)
G27335 NA non-coding downstream 146784 37092649 ~ 37093300 (-)
G27302 NA non-coding downstream 270328 36967127 ~ 36969756 (-)
G27254 NA non-coding downstream 472145 36767653 ~ 36767939 (-)
G27252 NA non-coding downstream 479495 36760345 ~ 36760589 (-)
G27243 NA non-coding downstream 494218 36744068 ~ 36745866 (-)
G27435 NA non-coding upstream 323786 37566769 ~ 37566983 (-)
G27436 LOC107666014 non-coding upstream 324220 37567203 ~ 37567566 (-)
G27438 NA non-coding upstream 327276 37570259 ~ 37570881 (-)
G27463 NA non-coding upstream 534086 37777069 ~ 37777318 (-)
G27491 NA non-coding upstream 774247 38017230 ~ 38017469 (-)
AMCG00007907 NA other downstream 393501 36842475 ~ 36846583 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 1229089 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 2370277 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 5423933 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 5897292 31338716 ~ 31342792 (-)
G27416 blcap,bc10 other upstream 251928 37494911 ~ 37499392 (-)
G27437 NA other upstream 324634 37567617 ~ 37569284 (-)
G27439 NA other upstream 327974 37570957 ~ 37571488 (-)
G27442 chd6 other upstream 330051 37573034 ~ 37588525 (-)
G27502 NA other upstream 842946 38085929 ~ 38091878 (-)

Expression


Co-expression Network