AMCG00007934 (LOC104960738)


Basic Information

Item Value
gene id AMCG00007934
gene name LOC104960738
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37469923 ~ 37481171 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007934
CGGAACTAAAGCGCACAGCAGCCAGTTTCCTCCGGCGCGGTGACGCTGCGGCTCGGCGTGATGGACAGCCAAACAAGCGTCTGCGGGGCTGGGGTTTTGCTTTCGGTTCAGTGTTGTGTCGACTCATTTGAAGATGGCAGGGCTGGAGCTGCTCTACACGTCTGTGGCCAGAGACATAGCCTGTCCGCAGGACGCGCTGCTGTGCTTCGTGCACTGGGAGGTCGTGAGGAACGGGTACAAGTGCCTCGGCACCGGAGACCAGGCCCAGAGCAGCGACAAACAGTCGGAGCTGCTGCCGGCGGGGTGGAACGGGAGCAGCGAGCTGTACACGCTGCGGTACCGGGCCGCCGGCGACGCGACCGGCCTGCTGCTCAAAGCCGTCACGGTGGATACGACGCTCATCTTCAACGTCATGGACTCGGCCTCAGAACAAGTTTATGATCTGACCGTGAGTTTCAGTGACTATGTGAATGCAGATGGTCTGCAGGCCTTTGACAGTGCGTTTAAGAACTCGGAGGAGCTGAGGTCCAAGGTGAAGTCGGGGCTGCTCCCGCCAGTCCCCTCCCAGAAGAGGAGGCCCGGCGAGAAGGCGGAGAAGAAGAGCCTGAGGGAGACCTCTCCAGACTCACGCCCCAGCAGAGACCCCCTCAGGATCCCTCCGTGGTCCCGCAACCCCCCCCGGCAGCCCGGCTGGCCAGACCCCATGGCTCCCTTTGCAGCTGGAGGTGCAGACTTGGATCCCTTTGGCGGCCGTCCTGGTGGCATGATCGTCGACCCGCTGCGCTCCGGGTTTCCGAGGTCCGGGTTCGACCCTTCCGCTGGCATTCCAGGCCGCCTCCCTCCAGGGGCCGTCCCGCCTGGAGCCCGTTTCGACCCGTTCGGACCAGTGGGCAGGAACCGGCCAGGGCCGGATCCTGACCACCTGCCCCCTCCTAGCTACGATGACATGTTCATGTAACCCTGGTTGGCTCTAACCCCCCGacacaccccccacacccccacccccactcccatGCCTACGGTCTTGGATCTGCAGTGGTTTGGAGTCGGAGCCCGGGCTTCCCCTGAAGGTTCTGCCCCTGCTGTGTAATAAACCATCTATATCCATGCTACAAAGGCTGTATAAACATAATCTAACTAACTAAGAAAACAGTGGTTTTTGTAGGGTTTATTTTTTGAAGCTGTACCGAACTGGCAAAGGCAGTGGAGTTTTCTTGTGTAACGGGAGGTGTCTTGCTACACAGAGTTGtgcgttctctctctctccagcccgTGCAGTGGAGCCCGGCTCTGTCGGGCTGTCTTCGTGGAAGCACTTTGTGAAGCTCTGCGGTGGTGTAGCGTGATCAAACGATCCGGACAGGGCTGAACAGCGCCGCTCTACTTCTGACGCTTCTGTGTTGTTCACCGCGTCGGGGTGGCTGCTGCTCACGCCCGTATTgtcagctgctgtttttttgttaaacccTGTGAGTCTTTCAGCCAAAGCGCCAGTCTTATCTCACCACCCGCGTGAGGCACTAAAATGCacttaaataaactaaaaacaggattttttttcctcatttagGAATACTTTGCaatgaaatgtttatgtaaCCGGATCATCTTAGGgttgaagaaaaacattagaaagGCTGGTATTAATTTATGGAAATGCCAATCAAAAAACAGGATTGTTAAGTGCAATTGTTAGTTGTATTTTTCACCACAATGGAAGGGGCCAGTTTAAAATCTGGTGATgactttgtgttgttgtttgtgaagAAGGAGTTCCTCACGGTAACTCCAGCTGCAGTGTTTCAACTGCTGCCCAAAAGGGTGTTCTGCAAGAGCGTGAGTTTCggtgttgttttgattttgaagctttgtagttttattatttccttgaaatgctttaataaatataaattgattagAA

Function

NR:

description
PREDICTED: proteasome inhibitor PI31 subunit-like

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06700 PSMF1; proteasome inhibitor subunit 1 (PI31)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007934 True 1921 mRNA 0.55 7 37469923 37481171

Neighbor

gene id symbol gene type direction distance location
AMCG00007931 rims4 coding upstream 123808 37336571 ~ 37346115 (+)
AMCG00007924 NA coding upstream 223116 37244267 ~ 37246807 (+)
AMCG00007925 NA coding upstream 270099 37191982 ~ 37199824 (+)
AMCG00007930 NA coding upstream 298821 37168866 ~ 37171102 (+)
AMCG00007922 NA coding upstream 333707 37135667 ~ 37136216 (+)
AMCG00007938 blcap,bc10 coding downstream 14027 37495198 ~ 37496202 (+)
AMCG00007940 NA coding downstream 15046 37496217 ~ 37501731 (+)
AMCG00007937 chd6 coding downstream 72822 37553993 ~ 37574386 (+)
AMCG00007942 NA coding downstream 97897 37579068 ~ 37590574 (+)
AMCG00007949 pigu coding downstream 521779 38002950 ~ 38010795 (+)
G27334 NA non-coding upstream 376593 37092649 ~ 37093330 (+)
G27300 NA non-coding upstream 513469 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 624399 36843981 ~ 36845524 (+)
G27253 NA non-coding upstream 701984 36767653 ~ 36767939 (+)
G27216 NA non-coding upstream 742806 36685310 ~ 36727117 (+)
G27400 blcap,bc10 non-coding downstream 13988 37495159 ~ 37499385 (+)
G27462 NA non-coding downstream 295894 37777065 ~ 37777462 (+)
G27489 NA non-coding downstream 535697 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 546209 38027380 ~ 38027923 (+)
G27552 NA non-coding downstream 958403 38439574 ~ 38439892 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 253365 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1167082 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1849122 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 3674982 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 6029545 31414154 ~ 31440378 (+)
G27518 NA other downstream 663813 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 687399 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 874758 38355929 ~ 38423155 (+)
G27551 NA other downstream 950874 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 1211568 38692739 ~ 38708915 (+)

Expression


Co-expression Network