XLOC_006012 (soul2)


Basic Information

Item Value
gene id XLOC_006012
gene name soul2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27040887 ~ 27043334 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011866
TCATCTAGAAGTGCAAATGGCGATGTATGTGGCTTCTGCTCTGTGTCTCCTTGTCGGACTTGTATGTTTCACAGCTACAGAATGTTGGCAAGCACCCTGGTTTTGCCATCAAAAGGACTGCCCTGTGTACACTGTGGTAAACCAATATGGGgaaatagaAGAACGCAACTATGAAATGAGCAACTGGATTACCACCGATATTTTAAGCACAGGCAAGGATGATGTATCAACTGGATTTTGGAAACTATACTATTTTATTCAAGGGCAAAACAAGGAGAATAAGCAGATTGCTATGACCAGGCCTGTGGTGGTCTCAGTAAAGGATGGTGCGGAGGGGCGACGCGTCTCCATTTCTGTCTTTCAGCAAGACCCCAACATCCCCGATCCAGTTGACACGACTATCAGAAAAACAGTTGTTCCGGCTGGTACTGTCTATGTCAGGTCATTTGGTGGGTGGCCATCTGATCAAGACGCCCAAGATAATGTGCAGAAGCTAAAGGAGGAGCTCAAGGCTGCCGGAAAGCAGTTTATTGAAGACCAATTTGAAGCAGCTGGGTACGACTCACCATTGGAGTTGCTCAACAGGCACAATGAAGTTTGGGTCCATGCACCCTGAGGCTAAATAATTTTTCCTCATTCCTACAGTATAAGCTTATGAAGATTTCCCTGCATAAGAACATAAAATGTTCATGTAGTATAACTATAGTATTAATATAATCATGTTTCAGTCGTAATCCTTGATTAATGTTTCACTCTGTGCAAATACAAGTGTTAAAGCACTCTGGGGTTGTTTGGCAGGATTATAAACTGGTTTTAGGAATGTGAGGGCTATCATCTTAAATATGGTTCACATAGTTTCACATTGCAAGTTACTGAACTCTAACTCAATACTAACACTATCAGCTTTGAAGATTAAACTTTTGCCATCTTAagaacatttttattctttttttatcatGCATCATGCTTGACATCACATTTTTGTAATCagtaatttaattagatttttaatttacaccatttattttagatttaatatCAAAGTCATTATATAAACTGGATAAAAAAGTAGATTGTAAACCTTAACCTATATTTAAACTTAACTTTAGGCCATGTTTAGCCCATGTCTATAGTGATTACATAAAAACAAGGACGATTGATACACAAAATACATCAAGTTTCCAAAATAGATGAGAAACGGGTTCAGGAATGACTAGAATGAGGATAATGGGATTCCAATCGGTCTTTAATCATGTTTTAAGAAACTCCTCCGCCTAAACAAGTCTAACCAGCTAGTGAACTGGAACTTCGCTTAAGTAGTTaatgaatttgatttttttttaaaatgaagacaaaCAATGTGATTATTGTGAAAACCATCACAATTAAGTTAAagttttattttcaaatgtttcaCATTGAATTATCATTGATTAGAATTAGAATGATTATTAATGTATAACTTGTTTgctaataaaacatatttttcatGCA

Function

symbol description
soul2 Predicted to enable heme binding activity. Predicted to be active in cytoplasm. Is expressed in several structures, including EVL; digestive system; periderm; pronephric duct; and sensory system.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2524 Predicted to enable heme binding activity. Predicted to be active in cytoplasm. Is expressed in several structures, including EVL; digestive system; periderm; pronephric duct; and sensory system.

Ensembl:

ensembl_id ENSDARG00000039499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011866 True 1494 mRNA 0.36 4 27040887 27043334

Neighbor

gene id symbol gene type direction distance location
XLOC_006011 NA coding upstream 231568 26802494 ~ 26809319 (+)
XLOC_006010 fancl coding upstream 260090 26703897 ~ 26780797 (+)
XLOC_006009 NA coding upstream 975623 26056457 ~ 26065264 (+)
XLOC_006008 NA coding upstream 1057522 25965727 ~ 25983365 (+)
XLOC_006007 NA coding upstream 1079518 25944279 ~ 25961369 (+)
XLOC_006013 slc24a3 coding downstream 30567 27073901 ~ 27210001 (+)
XLOC_006014 BX323884.1 coding downstream 173307 27216641 ~ 27232573 (+)
XLOC_006015 rin2 coding downstream 189360 27232694 ~ 27296949 (+)
XLOC_006016 slc17a5 coding downstream 255339 27298673 ~ 27313556 (+)
XLOC_006017 eef1a1a coding downstream 271461 27314795 ~ 27325885 (+)
XLOC_006005 NA non-coding upstream 1258076 25769999 ~ 25782811 (+)
XLOC_006019 CR354610.2 non-coding downstream 320615 27363949 ~ 27391937 (+)
XLOC_006021 NA non-coding downstream 741760 27785094 ~ 27805880 (+)
XLOC_006022 dre-mir-30e-2 non-coding downstream 751796 27795130 ~ 27795209 (+)
XLOC_006024 NA non-coding downstream 1220902 28264236 ~ 28282323 (+)

Expression


Co-expression Network