AMCG00007942


Basic Information

Item Value
gene id AMCG00007942
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37579068 ~ 37590574 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007942
GATTGCGGCGAGTGTTTTGGAGGACCGGAGGTGTGTGAGGAGAAACGTCCCGCAGAAGAAAGCGGTGCGCTTGAGTGACGGGGCTGCGGGGCGAAATGCGAGAAGACCAAAGCGACCCCGAGTCTGGGTCGGAGTCCGGGAGGCCGGACGAGCCTGCGGTGCGGAGGAGCCTGGAAGCTCTGTGCCGAGAGCTGAACATGGACGAGGAGACCGGGAGGGACGCGCTACGGAGCTTTACAGCCATCCGGGAGACCTACACCCTGGAGGGAGACGTGGTGCACTGGTTGGCCTGCGCCCTGTACGCTGCCTGCAGGAAGGGCCGCACTCCCACCGTAGGCAAGGGAGTGATGGAGGGTAACTGTGTGTCTCTGACCCGGATCCTGCGCTCCTCTAAGCTGAGTTTAATCCAGTTCTTTAACAAGATGAAGAAGTGGGCAGACATGTCCAATCTGTCTGCGGAATTCCGGGACCGGATCGCGCGCCTGGAGAGGAATTTCGAGGTCTCCACGGTGATCTTTAAGAAGTTCAAGCCCATTTTCCTGGACATGTTCCAGAGCCCGTGGGGGGAGCCGCCCAGACAGCCGCGCAGCCGCAAGCACAGGCGCCTGCCCTGCCACATCAGTGATGTGTTTAAGTTTTGCTGGACCCTCTTTGTGTACACTAAAGGGAACTTCCGAATGATCGGCGATGATTTGGTGAATTCCTACCACCTCCTGCTCTGCTGCCTGGACCTGGTTTTCGGCAATGTGCTACTGTGTGCGAACAGGAAGGACCTCATCAACACTCAGTTCAAAGGGTTGCCTGCGGAGTACCACAGCCCAGACTACAGCCCGTCCGCCGAGCCCCCCTGTGTCATCGACCGGCTGTGCCAGCTGCATGACGGGCTGGTAGTAGAAGCCAAGGGAATTAAGGAGCATTACTTCAAGCCCTACATTAAAAAGCTCTTCGAGAGACAGATCCTGAAGGGGAGCGAGGAATCTCTGATTGGACTGCTGGATGTGTCCAACTTCATTGACAACAACAAAGCGGTGAACAGAAAGTACGAGGAGTACGTGCTGACGGAGGGCGATTTCGATGAGCGGGTGTTCTTGGGAGCGGACGCGGAGGAGGAGATTGGGACGCCCCGCAAGGCTGCGCTGGACCTCCCTGAGGGCCGGCTCTCCGCACGCATGCAGGTGGAGTGCAACCTGCAGCAGCACTTTGAGAAGACGCGGTCCTTCGCCCCCTCTACTCCGCTGACGGGACAGAGGTACCTGAAGGACAAGGATCCCCTGGTGACCCCTGTGTCCTCGGCCACCCAGAGTGTCAGCCGGCTGCAGAGCATGGTGTCCGGGCTGCGCAACTCCCCCAGCGAGCAGctgctgcaggtcttcagGTCATGTTCCCGCGATCCTACAGAGACGATCTTGAAGTGGGTGAAGGGCTGGGGCGAGACTTTCCGACAGCACTACACAAAGCACACCGAGGAGCAGCCGGGGTCCCACATGGATTTTGCTGATAACCGGTTAAAACTGGCAGAGATCCTGTACTTCAAGATCCTGGAGAATGTCATGGTCCAGGAAACTCGCCGGCTGCACGGCAAAGACATGGCAGTGCTGCTGGAGCAAGACATCTTCCACTGCTCTCTGATGGCCTGCTGCCTGGAGGTGGTGCTGTTCGCTTACAGCTCCCAGCGCACTTTCCCCTGGATCATCAACATATTCAAGCTGCCGCCTTTCTACTTCTACAAGgtGATCGAGGTGTTTATCCGGTCTGAGGAGGGGCTTTCCCGGGACATGGTGAAGCACCTGAACAGCATTGAGGAGCAAATTCTGGAGAGCCGGGCCTGGTCCTCGAACTCCGCACTGTGGGAGGCTCTGAAGGCGGTAAACGACAAAGTGCCCACGGTGGAGGAGGTGACACTACCCAGTAACTTTGAAACGGGGAACGGCCACAGTGGCCCCACGCATCTGCCCCTGGTCGCCCTGTCGCCCATCATCCACCCACGGCTCAGGGAGGTGAGGATCGGCCTGGGAGGCAGCGCCCACAAGGCAGACATCCCTCCTTCCCCGATCTCCGTGCATGACCGCTACAGCTCACCCACTGCGGGCAGCGCCAAGCGCCGGCTCTTCGGCGACGACGGCTCCTCTGCGTCTCCGGTCAAGAAGATCTCCTTCTCCCAGGGGGGGAGCTTGAAGATCGTGCCCACCTCGCCCTGCGACGCCACGCACATGTCCCCGGCCCGCCCCGTCTTCACCATGACGACTGCCACCATCACCATACCTGTGCAAGGTGTGGCGAACGACACGGGAGCAATTTCCTTCTTCCAGCTGCAGTCCGGGGAGCGCAGTCCTCTCACTGCCCAGGCATTGCTCCCCGCCTCCCCCAGCCGGGCCGGGCTGGGGCCCCCCACCCTGGACCCCCCGAGCAGCGCCAACAAACCCCGGAAGACGGGCTCTCTGGCGCTGTTCTTCAGGAAGGTGTACCACTTGGCCAGTGTGCGGCTGCGAGACCTCTGCCTGAAGCTGGATGTCTCTCTGGAGCTGCGCCGGAAGATCTGGACCTGCTTCGAGTACTCGGTGGTCAACCACCCAGAGCTCATGAAGGATCGGCACCTGGACCAGCTTCTCATGTGTGCGGTGTACATCGTGTCCAAGgcgacAAAGGAGGAACGCACTCTGCAAGACATCATGGGGTGCTACCGCAGCCAGCCTCAGGCCAGCAGCCATGTGTACAGAAGTGTCCTCCTGGAGAAGGCTGATGATCAGTCCACCAATAATGGAGACATTCCCAACATGGACGAGGtCGAGGAGGATGAGAGGGGCTCAGGGTCAGACATGTGTGGCGGAGAGTTGAGAGGTGACCTCATCCAGTTCTACAACAAAGTCTACGTGCTGAAGATGACCGGGTTCGCCCACAAGTACAACAGCGCGAGTGCTGAGCCGGGGCTTGCGGCGCCCCCCTTGTCTCCGTACCCCTCGATCAGAGCCCATCCCTTGTCCCCACGCCGTGTCTCCCAGAGACACTCGGTGTACATCTCTCCGCACAAGAATGGCTCCTGCCCAACCTCCTCTTCTGCCATCACCTACAAGTTTAACGGGAGCCCTTCCAAGAACCTGAGAGACATCAACAGCATGATCAAGCAGGGCGAGCGGACGTGCTGGAAGCGGGCGTTCACCATGGACAGCGACTCCGAGTCGCCGGCCAAGCGGCTCTGCTCCGAGAGCGACGATGTGCTGCTCAAACGCCTGCAGGACGTGGTGAGCGAGAGAGCCAACCGCTGACCCCCTGCTTATCCAGGGTCAGCGCTGATGCCACGCAGCCCACGCAGTGCTGCTCTCAACACTTGGACAGCACCACCTTCCACGTAGAACGATGGGAAGGGTGTTATTTCTTTTGCTGTCTCGGCTCCAGTTGTCACTTAGGAATCTGCAGCAATGGTTCTGGCCTCTTGACCCCTACAGCATGTGACTGTAACTCGAGCTGTGCACGTGTCTTCATCAGCACCATGTCACAGGAGTGTAAGCTATGAAAATcatatattgtttgtgtttaattacacTGTCTGCCGAGTTCTTGGTTCTAAACTGAAAGGTAATGGTTTACCTTTTCCTCTGTGTATGGCATGTGTaccagaggagagagagagaacccaaGCATTAATCACTTCTGACTCTCGCTGGACTGGGTGTTTCTGCTGGGATGCAGATGTGCTACAAACGTGGACCTATGAGAGGCAGACCAAGTTACTGTTTCCTACATTAGATAGTTGCCAAACTATCGCATTTGTTCTTGTGTTTAAGGTTTGTCATGGGTCTATAGTGCGATGTGTGGCATCGACACTTCTAACCATCGTTACCATTTTCATTTGTCATGCTTCCAATGTTATACCGTTAACAGTAATTTGTTCTTATCGGAGTCTGGAGTTGCCTTGTTTCCTCTGCTCTCCTTGGACTCTCTTTTGCATGGACCTGTGCAGTTGATTGACAGTAGAGAACTCTTGAAGTGTAATATTACTTTGAGTGGAATGTACCCTGACTGTATTCAGTAGAATATTACTGAAGCTTTAATGGGCTGGATACTGTTGGGTATCAGGCTTCCAGTTCCCCTGTTAAGTGAAGGGCTGCCCTCGACAGTGCTGCACAGACTGGCCTTACAGACTCTTCTGATCGGCTCTGACTGCAGTGCCTTTGCTTGCCCAGTCGTGTCAGACATCTTTCAGTTAGCAGCGATCCAGTGCAGGTCTCTAGGCTCGGTGGCGTTTCATTCTGCCCagtgttggtttaatttgcatTGCTTCACTTTAATTTCTCGGCTGTGGATCTGCAGCTCCCTGTCAGACTGTGGGTCTAATGAAAGGACTGAAGCAGCTCGAGCTTGCGTCCAAGCCCGGCCTCGGCGCTGTGGCTTCATAATCCAGTGCACATAAATTATGGTTGTCTtactccttttttatttgtttttggttgtttccACTGAGACCTGTACAGTGAAAACCccttttgtatgtattttaaaaaggtgaagTTTGTAATAAGAACtttaaatccccccccccaaaagagTAAACGCTTTATATAGACCAGTAGCTTGACATgtacatatgaaaataaagtgcaagctttttaaaa

Function

GO: NA

KEGG:

id description
K04681 RBL1; retinoblastoma-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007942 True 4610 mRNA 0.56 22 37579068 37590574

Neighbor

gene id symbol gene type direction distance location
AMCG00007937 chd6 coding upstream 4682 37553993 ~ 37574386 (+)
AMCG00007940 NA coding upstream 77337 37496217 ~ 37501731 (+)
AMCG00007938 blcap,bc10 coding upstream 82866 37495198 ~ 37496202 (+)
AMCG00007934 LOC104960738 coding upstream 97897 37469923 ~ 37481171 (+)
AMCG00007931 rims4 coding upstream 232953 37336571 ~ 37346115 (+)
AMCG00007949 pigu coding downstream 412376 38002950 ~ 38010795 (+)
AMCG00007950 NA coding downstream 420602 38011176 ~ 38014794 (+)
AMCG00007947 NA coding downstream 428318 38018892 ~ 38026850 (+)
AMCG00007951 LOC107385061,LOC106582629 coding downstream 476814 38067388 ~ 38070843 (+)
AMCG00007948 NA coding downstream 490182 38080756 ~ 38086751 (+)
G27400 blcap,bc10 non-coding upstream 79683 37495159 ~ 37499385 (+)
G27334 NA non-coding upstream 485738 37092649 ~ 37093330 (+)
G27300 NA non-coding upstream 622614 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 733544 36843981 ~ 36845524 (+)
G27253 NA non-coding upstream 811129 36767653 ~ 36767939 (+)
G27462 NA non-coding downstream 186491 37777065 ~ 37777462 (+)
G27489 NA non-coding downstream 426294 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 436806 38027380 ~ 38027923 (+)
G27552 NA non-coding downstream 849000 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 850962 38441536 ~ 38442071 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 362510 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1276227 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1958267 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 3784127 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 6138690 31414154 ~ 31440378 (+)
G27518 NA other downstream 554410 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 577996 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 765355 38355929 ~ 38423155 (+)
G27551 NA other downstream 841471 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 1102165 38692739 ~ 38708915 (+)

Expression


Co-expression Network