AMCG00007944 (LOC106582631)


Basic Information

Item Value
gene id AMCG00007944
gene name LOC106582631
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37925271 ~ 37936478 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007944
ATGAAGGATTTTCGACTGACTCCGAAAAGGTCAGCGAGCGACGTGCGCGTCTTCAAGACCAGGCACTTAGATATCTCTGAAtccactctctctcctccttcatGCACAGGCTCCTTCATGATGGTGAACAGCTCGGGCCGGGCGTCGGGCCAGAAGGCCCACCTGCTGCTGCCCACGCTGAAGGAGAACGACACGCACTGCATAGACTTCCACTACTCGCTGTCCAGCAAGGACGGCTCCAACCCTGGTGCCCTCAACGTGTATGTGAAGGTGAACGGGGGGCCGCAGGGAAACCCCGTGTGGAACGCTTCCTCCGCGGGCGTCACCGAGGGCTGGGTCAAAGCGGAGCTCGCCATCAGCACCTTCTGGCCCAACTCCTACCAGGTCAGCTGCTGTCCCCAGGGGGTTattgcgtttgtgtGGAAGGCGCCACATTTCTTGCGACTGCAGAACGTGGAGGTGAACGTGGGGCAGAATGCCACCTTCCAGTGCATGGCTGGGGGCAAGTGGTCCCAGCACGACAAGCTTTGGCTGCAGCAATGGAACGGAAAGGATACTGCGCTCATGGTGACCCGGGTGGTGAACCACCGGCGCTTCTCCGCCACCGTGAGTGTGGCCGACACCTCACAGCGCAGCGTCAGCAAGTACCGCTGCGTCATCCGCTCCGATGGGGGCTCCGGAGTGTCCAACTACGCAGAACTAATTGTGAAAGGTAAGGCTGGTAATAGCCCGTATCAACCATCAATCAAAGCACAGCTGGGGTCTTTGAGAAGCGATATCTGCGCTCAAACCTGTCATTATTTCAGCCATCAGCAGCGCGTGTTTTGA

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase T-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007944 True 828 mRNA 0.58 4 37925271 37936478

Neighbor

gene id symbol gene type direction distance location
AMCG00007946 LOC106565046 coding downstream 8795 37912578 ~ 37916476 (-)
AMCG00007945 ptprt coding downstream 48519 37866450 ~ 37876752 (-)
AMCG00007943 LOC108442925 coding downstream 98079 37791441 ~ 37827192 (-)
AMCG00007939 NA coding downstream 406148 37500784 ~ 37519123 (-)
AMCG00007941 tmem74b,LOC102310340,LOC102787133 coding downstream 434438 37487728 ~ 37490833 (-)
AMCG00007953 NA coding upstream 210041 38146519 ~ 38148924 (-)
AMCG00007954 ergic3,ergi3,LOC107685813,LOC106565050 coding upstream 228733 38165211 ~ 38176299 (-)
AMCG00007955 LOC101480083,LOC100694607,LOC102788290 coding upstream 240043 38176521 ~ 38181573 (-)
AMCG00007958 eif2s2,if2b,LOC105906812 coding upstream 490870 38427348 ~ 38434063 (-)
AMCG00007961 ahcy,sahhb,LOC107596784,LOC107729767 coding upstream 547333 38483811 ~ 38492269 (-)
G27463 NA non-coding downstream 147953 37777069 ~ 37777318 (-)
G27438 NA non-coding downstream 354390 37570259 ~ 37570881 (-)
G27436 LOC107666014 non-coding downstream 357705 37567203 ~ 37567566 (-)
G27435 NA non-coding downstream 358288 37566769 ~ 37566983 (-)
G27335 NA non-coding downstream 831971 37092649 ~ 37093300 (-)
G27491 NA non-coding upstream 80752 38017230 ~ 38017469 (-)
G27557 NA non-coding upstream 503125 38439603 ~ 38439862 (-)
G27626 NA non-coding upstream 774374 38710852 ~ 38712337 (-)
G27639 NA non-coding upstream 812649 38749127 ~ 38767568 (-)
G27661 NA non-coding upstream 839683 38776161 ~ 38779752 (-)
G27442 chd6 other downstream 336746 37573034 ~ 37588525 (-)
G27439 NA other downstream 353783 37570957 ~ 37571488 (-)
G27437 NA other downstream 355987 37567617 ~ 37569284 (-)
G27416 blcap,bc10 other downstream 425879 37494911 ~ 37499392 (-)
AMCG00007929 NA other downstream 682288 37240084 ~ 37242983 (-)
G27502 NA other upstream 149451 38085929 ~ 38091878 (-)
G27522 NA other upstream 224808 38161286 ~ 38164542 (-)
AMCG00007984 NA other upstream 968280 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 988103 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 1096309 39032787 ~ 39049597 (-)

Expression


Co-expression Network