AMCG00007945 (ptprt)


Basic Information

Item Value
gene id AMCG00007945
gene name ptprt
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37866450 ~ 37876752 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007945
ATGGAGGGCGGCGCAGCTGTCGGGACCGAGTGCGTGTTGCTCAGTGGGCGTCTGCCACCGCGCACTGCACAGGAAATTGGCAACGCCACAGGCCGCTCACCCCAGGAACGAACCGAGCTGCTGGTGCTGATTGCTTACTACATATTGCTGgtgATCACCTACAAAGCGCTCAGCTCCCTGGACCCCAGTGCCGAGCTCTCCGGGCAGCGCGGCAGGGTGTTCAAGCTGCGCAATGAGACGCACCACCTGTTCGTGGGCCTGTACCCCGGCACCACCTACTCCTTCACCATCAAGGCCAGCACCATGAAGGGCTTTGGACCCCCGGTCAACACGCGCATCACCACCAAAATAtccgcgCCCTCGATGCCGGAGTACGAGACAGACGTGCCTCTCAACGAAACGGACACCACCATCACAGTGCTGCTGAAGCCAGCGAAGTCCAGAGGGGCCCCAGTCAGCGCCTACCAGCTGGTGGTGAAGGAGGAGCGGAAGCAGAAGGCCAGGCGGGCAGCCGATGTGGTGGAGTGTTTCGCGGTGCCCGTCAGCTTCAAGAACGCCTCCATCGTCGACTCCCCGCACTACTTCGCGGCCGAGCTGCCCCCCCTCAGCCTGTCAGTGACGCAGCCGTTCACCGTGGGCGACAACAAGACCTATAATGGCTACTGGAACGCCCCCCTCTCGCCCGCCAAGAGCTACAGCATTTACTTCCAGGCGCTGAGCAAAGCCAACGGGTCCATTTGGGCGGCACATCAGTGA

Function

symbol description
ptprt Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTPRT (protein tyrosine phosphatase receptor type T).

NR:

description
receptor-type tyrosine-protein phosphatase T isoform X14

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007945 True 756 mRNA 0.62 7 37866450 37876752

Neighbor

gene id symbol gene type direction distance location
AMCG00007943 LOC108442925 coding downstream 39258 37791441 ~ 37827192 (-)
AMCG00007939 NA coding downstream 347327 37500784 ~ 37519123 (-)
AMCG00007941 tmem74b,LOC102310340,LOC102787133 coding downstream 375617 37487728 ~ 37490833 (-)
AMCG00007935 NA coding downstream 427941 37423717 ~ 37438509 (-)
AMCG00007936 NA coding downstream 461587 37404441 ~ 37404863 (-)
AMCG00007946 LOC106565046 coding upstream 35826 37912578 ~ 37916476 (-)
AMCG00007944 LOC106582631 coding upstream 48519 37925271 ~ 37936478 (-)
AMCG00007953 NA coding upstream 269767 38146519 ~ 38148924 (-)
AMCG00007954 ergic3,ergi3,LOC107685813,LOC106565050 coding upstream 288459 38165211 ~ 38176299 (-)
AMCG00007955 LOC101480083,LOC100694607,LOC102788290 coding upstream 299769 38176521 ~ 38181573 (-)
G27463 NA non-coding downstream 89132 37777069 ~ 37777318 (-)
G27438 NA non-coding downstream 295569 37570259 ~ 37570881 (-)
G27436 LOC107666014 non-coding downstream 298884 37567203 ~ 37567566 (-)
G27435 NA non-coding downstream 299467 37566769 ~ 37566983 (-)
G27335 NA non-coding downstream 773150 37092649 ~ 37093300 (-)
G27491 NA non-coding upstream 140478 38017230 ~ 38017469 (-)
G27557 NA non-coding upstream 562851 38439603 ~ 38439862 (-)
G27626 NA non-coding upstream 834100 38710852 ~ 38712337 (-)
G27639 NA non-coding upstream 872375 38749127 ~ 38767568 (-)
G27661 NA non-coding upstream 899409 38776161 ~ 38779752 (-)
G27442 chd6 other downstream 277925 37573034 ~ 37588525 (-)
G27439 NA other downstream 294962 37570957 ~ 37571488 (-)
G27437 NA other downstream 297166 37567617 ~ 37569284 (-)
G27416 blcap,bc10 other downstream 367058 37494911 ~ 37499392 (-)
AMCG00007929 NA other downstream 623467 37240084 ~ 37242983 (-)
G27502 NA other upstream 209177 38085929 ~ 38091878 (-)
G27522 NA other upstream 284534 38161286 ~ 38164542 (-)
AMCG00007984 NA other upstream 1028006 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 1047829 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 1156035 39032787 ~ 39049597 (-)

Expression


Co-expression Network