AMCG00007946 (LOC106565046)


Basic Information

Item Value
gene id AMCG00007946
gene name LOC106565046
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37912578 ~ 37916476 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007946
ATGCCCATTCTGAAGGCAGTGAAGTGGATAGCTCCGCCCACCCCGATCGCACCCCCAGAGCTGCTGGCAGTGGGTGCCACCTACCTGTGGATTAAACCCAACGCTAACTCCATCATCGGCGATGGGCCCATCATCCTGAAGGAGGTGGAGTATCGCACCACCACGGGCAACTGGGCTGAGACCCACATCGTCGACTCGCCCACCTACAAGCTGTGGCACCTCGACCCGGATGTGGAGTACGAGATCAAGGTTCTGCTGACCCGGCCTGGGGAAGGAGGCACCGGCCCGCCCGGCCCGCCTCTCTTCTCGCGCACCAAATGTGCCGGCCAGTGCCATCAGATGAAACACTTCAAATGA

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase T isoform X18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007946 True 357 mRNA 0.61 3 37912578 37916476

Neighbor

gene id symbol gene type direction distance location
AMCG00007945 ptprt coding downstream 35826 37866450 ~ 37876752 (-)
AMCG00007943 LOC108442925 coding downstream 85386 37791441 ~ 37827192 (-)
AMCG00007939 NA coding downstream 393455 37500784 ~ 37519123 (-)
AMCG00007941 tmem74b,LOC102310340,LOC102787133 coding downstream 421745 37487728 ~ 37490833 (-)
AMCG00007935 NA coding downstream 474069 37423717 ~ 37438509 (-)
AMCG00007944 LOC106582631 coding upstream 8795 37925271 ~ 37936478 (-)
AMCG00007953 NA coding upstream 230043 38146519 ~ 38148924 (-)
AMCG00007954 ergic3,ergi3,LOC107685813,LOC106565050 coding upstream 248735 38165211 ~ 38176299 (-)
AMCG00007955 LOC101480083,LOC100694607,LOC102788290 coding upstream 260045 38176521 ~ 38181573 (-)
AMCG00007958 eif2s2,if2b,LOC105906812 coding upstream 510872 38427348 ~ 38434063 (-)
G27463 NA non-coding downstream 135260 37777069 ~ 37777318 (-)
G27438 NA non-coding downstream 341697 37570259 ~ 37570881 (-)
G27436 LOC107666014 non-coding downstream 345012 37567203 ~ 37567566 (-)
G27435 NA non-coding downstream 345595 37566769 ~ 37566983 (-)
G27335 NA non-coding downstream 819278 37092649 ~ 37093300 (-)
G27491 NA non-coding upstream 100754 38017230 ~ 38017469 (-)
G27557 NA non-coding upstream 523127 38439603 ~ 38439862 (-)
G27626 NA non-coding upstream 794376 38710852 ~ 38712337 (-)
G27639 NA non-coding upstream 832651 38749127 ~ 38767568 (-)
G27661 NA non-coding upstream 859685 38776161 ~ 38779752 (-)
G27442 chd6 other downstream 324053 37573034 ~ 37588525 (-)
G27439 NA other downstream 341090 37570957 ~ 37571488 (-)
G27437 NA other downstream 343294 37567617 ~ 37569284 (-)
G27416 blcap,bc10 other downstream 413186 37494911 ~ 37499392 (-)
AMCG00007929 NA other downstream 669595 37240084 ~ 37242983 (-)
G27502 NA other upstream 169453 38085929 ~ 38091878 (-)
G27522 NA other upstream 244810 38161286 ~ 38164542 (-)
AMCG00007984 NA other upstream 988282 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 1008105 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 1116311 39032787 ~ 39049597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location