AMCG00007947


Basic Information

Item Value
gene id AMCG00007947
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38018892 ~ 38026850 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007947
TGCACACCGTTTTTAAAGACTTTTTTGTAATAATCAGAAACAGCCTAGTTTAATCATGGCAAAAGATCGACTGGCGAAGATGTTTTAACAGAAATACCAGTaccaatacaacaaaaacagcagagcaCTGTTGGATATATGtgtagagcagtacattaaagcacacttacattttaaatatattataggtgtagttaaaagcattaaataccaACCATTTATAAcaatcttaatttgttttccaactgTGGCCCCCCAAACACTCAGCCGCATGAATGTGCAGTGAGCGCACCTCCTACACCTGTCTGCAGACCTGCAGCGCCCAGACCCCAGACACTGCGCAGACCGGCGCATGCGCCTGAGCCGCGTCCCAATCTGAGCGCATCATTATTACCATTACATTGACAAAGAAAGATATCAAACAAAACGTTGCGACTGGTGTTAAAATGAGCGCCTCCGTGCAGCACAGGCTCTCTCTTCCCACAGTGCAGGGCCGGCGGCTCGGGAAGCGCGGCGGGGGTGGGGCCTAATTATACAAACATTCGAACCTTACGTAAGGGGCGCAGCAGCCAATGGGAGTGCGCAACGCTCTGCGGTCCCCCGGCTGTGATTGGCCGGCGAGAGACAGCGCTCCGAGTCCCGCCCCTCGGCCCCCTGGAAGCCGGCGTGTGTGAATCCGGCGGCGCGTCCGTGTTCAAGGGCGCCGGTGGCCCTGGCTCGCGTCGTGAGGAGGGCGATGCATTTTCAGCTCCTACTACTAGGACTGGGCGAAGTGCGACCTCGGTCTGTGTATTGAACTGCTCTGTGACAGCCTCGCTTCCCTGCGGCCGGGCTTAGCAATGAGCCGGTGTCCACGCGCTGCCCCGTCTATCCTGGACGACCACATCCTCACCTCCGAGGTGCTGCCGGTGGTCATCATTGGAAATGGCCCGTCGGGGATCTGCCTGTCCTACCTGCTGTCAGGGTTCACCCCCTATGTAACGGAAGAGGCGACACACCCCAACACTCTTCTGCAGCGAAAACTGGAGGAGAGACCCCACCAGTCCCTGCTGGAGCAGgaCCTGGAGTACCTGTGTGAGGGGCTGGAGGGCCGTTCCTCGAACCCGGTGGCCGTGTTGTTTGACTCGCTCCTGCTGCCGGGAAGCGACTTCGGCATGGACTGTGCCTCCGTGCTGCGGTGGCGCCACGAGCCGGAGCGCGCCGTCCCGCACCTGGTCTTGGGCAAGGGGCCGCCGGGGGGAGCCTGGCATGCCATGGAGGGCTCCATGCTCACACTCAGCCTGGCCAACTGGATGGAGCTGCCAGGCTTGAAGCTGAAGGATTGGGTCAGAGAGAAGCGCAGGAACCTCCGTAACGACCGCGCCACACCGGCCGAGATCGCCTTGTACTACCAGCACTACGTCTCCCACAGCGGCCTGCAAGACAACTTTGCCAGCGGCACCCTGGTGACGTCACTGCGCCGCGTGGCATGCAAGCCGGTTGCCGGTGCAGAGCGGGGCCCTGGGACAGTGTGGGAGGTGCGGGGCGTGCAGAGCGGCGAggcaggggaggggggcaagGCGGAGGAGCTGCCATTCTGCGTGTGTGCGGAGAGCGTGGTGCTGGCCACGGGCACGCACGACATCCCTGCCCGGCTGGCCGTGCCCGGTGAGGACCTGCCCTTCGTGGGCCACAGCTTCTGGGAGCTGGAGGCGGCCATCGCGGGGGGGCAGCTGGGGGGCCACGTGGACCCTGTGCTGATCGTGGGCGCGGGGCTGACAGCCGCGGACGCCGTGCTGGCAGCGCACCACTTGAACGCGCCCGTTTACCACGTCTTCCGCCGTGGCGTGGCTGACCCCGGCCTCATCTTCAACCAGCTGCCTAAGGTGCTGTACCCCGAGTACCACAAGGTGCACCAGATGATGATCCAGCAGCAGCACGGGGGAGGGGGCCCGGCCGACCCGGACGCCCCCCCCGGCAGCAGCCCTGGCCTGTTCTGCGGCTCCTACCCGGGCTACGCCAGCTTCCCCCGGCACCGCGTGGTCTCCTTCCGGCCTGGCAAGAAGTGCGTGCTGGAGGACGAGTGCGGCCGGCGCACCGTGCTGCAGGTGTCCATGGCGCTGGTGCTGATCGGGTCACACCCCAACCTCTCCTTCCTGCCCGAAGGCGGGCGGCGGCTGGGCGTGGACCCAGCCCAGCCAATCTCCTGCCGCCGCAACCCTGTGGACGTGGACCCTTTCACCCACCAGGTGCTGGCCGAGCCGGGGCTGTACGCCATGGGCCCGCTGGTCGGGGAGAACTTTGTGCGCTTCCTTAAGGGGGGCGCCCTGGCCATCAGCAGTGACCTGTCCCGGCGGCGCGGCTcgcgggtggtggaggaggggcGGCACGTGTagggggggtggaggaggacGACAGTTGTTTCTGTTAGCAACACCAGCCCAAATGGTGGAGGGAAATCGTGCCCTGCCTGTGTGCGCTGCTCTGACGGGCCCTCTTGACCTCTGTGCTCTCAGACCAGCCGCAGCAGGGCGCTCTGACGATACAGGGTCTGATCATGCACTTACGCTGCCCTCTGCACAGGCCTCGAGCGCGTGGGGGAGCTCTGCCGGCCTCATGGCGGATGATAATGGCCTCAATATTTCTCTTCTGGTTAaaagctgcttgttttctttatacAACTGTATTCACAGGAAACcatgccttttatttatttctccattCATTGTTAGTTTCTGTCCGTAGTGTATTGCACTTGTAcatgatgtttgttttcaaaacctCTGAAAAGCTGCTACTTTATCCCATAAATAATGCCACCCATAGCATGTTCAATGTTTGAACTCAAGCTCGTCTATGTTAAGCTGTTCGTGGCCTGGGGTCAGGGAGTGTATAGGATGTCGATCTCTCTCCCACACTCGGCACTGAACTCATTTTTCACCCTGTACAAAACCTCGAGTCGATTTCAAGATCGCCAGAGCAGGGGTCACTGGGTAACTGCGCACTCTGAGGGCGGGCCGACTGTGAAAACCAGTTCACACTCAGACAATATATTGTCTCACTGCGTTTTCTCCAGTGCATAGCTATCCACTTGGTCCGTGTTGGGTCCACATTTGATTTACAATTCTAAATCTACAAAAGTTTGACCATTTCCAGTGTTCACAAGCATTAATCGGAATGAAGTGTAGTTATGAATGGCATTATTTATCCTGGCAGTTCGACACAACCGCAGAAACAAGTTCCATCCGTGTAGCCCCTTTACATGAAATGTGGTTGTCTGTACTTTAATATGTGCTGCTCGTGGTCTAGCACACGCAGACGGGCTGTTTTTTTGCCTTTAGTGGGAAGTGTCTCAGAGAGGTGGGTGGCGAGTGTGAACTGAGGCCGGAGTGTGGCTCCACATTGCAGTACTATCAAAATAAATTGATCTattatcagattttttttttt

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007947 True 3429 mRNA 0.58 6 38018892 38026850

Neighbor

gene id symbol gene type direction distance location
AMCG00007950 NA coding upstream 4098 38011176 ~ 38014794 (+)
AMCG00007949 pigu coding upstream 8097 38002950 ~ 38010795 (+)
AMCG00007942 NA coding upstream 428318 37579068 ~ 37590574 (+)
AMCG00007937 chd6 coding upstream 444506 37553993 ~ 37574386 (+)
AMCG00007940 NA coding upstream 517161 37496217 ~ 37501731 (+)
AMCG00007951 LOC107385061,LOC106582629 coding downstream 40538 38067388 ~ 38070843 (+)
AMCG00007948 NA coding downstream 53906 38080756 ~ 38086751 (+)
AMCG00007956 NA coding downstream 446866 38473716 ~ 38476488 (+)
AMCG00007959 pmepa1,LOC106582623 coding downstream 537625 38564475 ~ 38570223 (+)
AMCG00007965 NA coding downstream 549272 38576122 ~ 38605013 (+)
G27489 NA non-coding upstream 1748 38016868 ~ 38017144 (+)
G27462 NA non-coding upstream 241430 37777065 ~ 37777462 (+)
G27400 blcap,bc10 non-coding upstream 519507 37495159 ~ 37499385 (+)
G27334 NA non-coding upstream 925562 37092649 ~ 37093330 (+)
G27300 NA non-coding upstream 1062438 36956182 ~ 36956454 (+)
G27497 NA non-coding downstream 530 38027380 ~ 38027923 (+)
G27552 NA non-coding downstream 412724 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 414686 38441536 ~ 38442071 (+)
G27561 NA non-coding downstream 454447 38481297 ~ 38482391 (+)
G27581 NA non-coding downstream 645021 38671871 ~ 38729032 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 802334 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1716051 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 2398091 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 4223951 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 6578514 31414154 ~ 31440378 (+)
G27518 NA other downstream 118134 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 141720 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 329079 38355929 ~ 38423155 (+)
G27551 NA other downstream 405195 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 665889 38692739 ~ 38708915 (+)

Expression


Co-expression Network